CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19114	Soybean	nucleus	58.21	54.01
CDY53983	Canola	nucleus	33.14	35.06
CDY32901	Canola	plastid	36.6	33.96
Bra035650.1-P	Field mustard	nucleus, plastid	36.31	33.42
AT5G57120.1	Thale cress	nucleus	30.84	32.42
CDY52493	Canola	plastid	34.29	32.16
PGSC0003DMT400051236	Potato	nucleus	37.46	31.86
Solyc07g008330.2.1	Tomato	nucleus	36.89	31.14
Os12t0613500-01	Rice	nucleus	36.02	27.9
TraesCS5A01G040600.1	Wheat	nucleus, plastid	37.18	26.06
TraesCS5D01G047700.1	Wheat	nucleus	37.18	26.01
TraesCS5B01G041800.1	Wheat	nucleus	36.31	25.51
HORVU5Hr1G009830.3	Barley	nucleus	36.89	24.33
VIT_11s0052g00300.t01	Wine grape	nucleus	29.68	22.74
KXG23990	Sorghum	plastid	35.73	22.59
GSMUA_Achr7P07940_001	Banana	nucleus	33.72	21.04
Zm00001d041495_P005	Maize	plastid	27.67	16.96

Protein Annotations

EntrezGene:100793322	MapMan:35.2	EMBL:ACUP02010322	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G058000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	UniProt:I1MSK1	InterPro:IPR006594	EnsemblPlants:KRH02764	ProteinID:KRH02764	ProteinID:KRH02764.1
InterPro:LisH	PFAM:PF05022	PFscan:PS50896	PANTHER:PTHR23216	SMART:SM00667	InterPro:SRP40_C
UniParc:UPI000233E08A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:4404265..4408779

Molecular Weight (calculated)

39267.4 Da

IEP (calculated)

9.418

GRAVY (calculated)

-1.390

Length

347 amino acids

Sequence
(BLAST)

001: MKHTDNGAFN SEHKVLLHQS IARYLKHSGF SKTLKKFRSE AQFEKNDLKG SPVDLEEMCL KYFEICGKDA KSNLNDQNEQ VAGVNSKNKE EGKSKEKKKK
101: KSKLVSESLA TNVEDDQLES VATAKENKEK DDVSTDAKVI NGSETEKKSK SKMKKKDNRS DEGDAIEQIG DPNETVSKEE NIEANKEITH EEKKDSKKRK
201: RSISEENGQQ VADIKADEET KRRKIENLNE SKEQTNGNLE KAGEKSSVQS SQKKQQKGSV EKKPVNAAFQ RVQVDKIQFA DERLQDNSYW AKDGAENGYG
301: AKAAEILDQV RGRGFRHEKT KKKRGSYRGG QIDLQSHSVK FNYSDED

Best Arabidopsis Sequence Match ( AT5G57120.1 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKET KVKVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK
201: KEENVVENDE GVQETPVKET ETKENGNAEK SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE
301: KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.