Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G172000.1
TraesCS3B01G202800.2
TraesCS3D01G178500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G57120.1 TraesCS3A01G172000.1 AT4G02150.1 21798944
AT5G57120.1 TraesCS3B01G202800.2 AT4G02150.1 21798944
AT5G57120.1 TraesCS3D01G178500.1 AT4G02150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G047700.1 Wheat nucleus 94.13 93.75
TraesCS5A01G040600.1 Wheat nucleus, plastid 93.93 93.74
HORVU5Hr1G009830.3 Barley nucleus 86.84 81.56
Os12t0613500-01 Rice nucleus 57.29 63.17
KXG23990 Sorghum plastid 58.91 53.01
Zm00001d041495_P005 Maize plastid 51.01 44.52
KRH02764 Soybean nucleus 25.51 36.31
CDY52493 Canola plastid 26.32 35.14
KRH19114 Soybean nucleus 26.32 34.76
CDY53983 Canola nucleus 22.47 33.84
Bra035650.1-P Field mustard nucleus, plastid 25.51 33.42
CDY32901 Canola plastid 25.1 33.16
AT5G57120.1 Thale cress nucleus 21.66 32.42
Solyc07g008330.2.1 Tomato nucleus 26.11 31.39
PGSC0003DMT400051236 Potato nucleus 25.91 31.37
GSMUA_Achr7P07940_001 Banana nucleus 33.81 30.04
VIT_11s0052g00300.t01 Wine grape nucleus 20.65 22.52
Protein Annotations
EnsemblPlants:TraesCS5B01G041800.1EnsemblPlantsGene:TraesCS5B01G041800GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR006594
InterPro:LisHInterPro:SRP40_CPANTHER:PTHR23216PFAM:PF05022PFscan:PS50896SEG:seg
MapMan:35.2:::::
Description
No Description!
Coordinates
chr5B:-:45874397..45877218
Molecular Weight (calculated)
52812.7 Da
IEP (calculated)
7.709
GRAVY (calculated)
-1.228
Length
494 amino acids
Sequence
(BLAST)
001: MLFVPRQVAL ASLPSTPAAA AAMAKEEAKK EKKSKSKGAA AKASPAPNAR VLAAVAAFLE ASGLPRTLAA LQSEANLEGD AWRSSPVNLE DAVSKLLESS
101: TSSPGADIAA GNEQEKTDDA VAEEKGAGKK KKNKKGGAEG HESEGKPSEP SAPEKPSEKA DDETKEKKRK KKKDSSSAGD DGEANAVVKT DDQKADGKKK
201: KSKKQENDED VEARLEKVEL AVKAKFEAAG KLKVDDKKSG EDEPKTQNDE ANENDLSDGA PLDKGKKKKK SKSTSETSDK TDAGTAPAEA EVKSNGASEN
301: SDAVGEGKEV NEKKSKKKKK KSGSEENVQV EDKQVAGKDP KPDDENKTAM DIENGEDGKA SADDAVVSKK RKLQEVEGSE PPAKEDITAT EDDVKEPSTA
401: SKSNKRQKLS EPKIAFQRVK TEGIKFADER LQDNSYWAKG GADSGYGAKA QEILGQVRGR DFRHEKTKKK RGTYKGGFID LQTHSIKFNN SDDE
Best Arabidopsis Sequence Match ( AT5G57120.2 )
(BLAST)
001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK KEENVVENDE GVQETPVKET ETKENGNAEK
201: SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE KTKKKRGSYR GGLIDQESHS TKFNNSDDEE
Arabidopsis Description
AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.