Factsheet for PGSC0003DMT400051236

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018802
PGSC0003DMT400076768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	PGSC0003DMT400018802	AT4G02150.1	21798944
AT5G57120.1	PGSC0003DMT400076768	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008330.2.1	Tomato	nucleus	88.73	88.08
KRH02764	Soybean	nucleus	31.86	37.46
Bra035650.1-P	Field mustard	nucleus, plastid	32.6	35.28
CDY52493	Canola	plastid	31.86	35.14
KRH19114	Soybean	nucleus	31.86	34.76
CDY32901	Canola	plastid	31.86	34.76
CDY53983	Canola	nucleus	27.7	34.45
AT5G57120.1	Thale cress	nucleus	26.47	32.73
Os12t0613500-01	Rice	nucleus	33.09	30.13
TraesCS5A01G040600.1	Wheat	nucleus, plastid	32.11	26.46
TraesCS5D01G047700.1	Wheat	nucleus	31.62	26.01
TraesCS5B01G041800.1	Wheat	nucleus	31.37	25.91
HORVU5Hr1G009830.3	Barley	nucleus	32.35	25.1
KXG23990	Sorghum	plastid	31.86	23.68
GSMUA_Achr7P07940_001	Banana	nucleus	32.11	23.56
VIT_11s0052g00300.t01	Wine grape	nucleus	25.74	23.18
Zm00001d041495_P005	Maize	plastid	27.94	20.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400051236	EnsemblPlantsGene:PGSC0003DMG400019897	EntrezGene:102596645	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:IPR006594
InterPro:LisH	InterPro:SRP40_C	PANTHER:PTHR23216	PFAM:PF05022	PFscan:PS50896	PGSC:PGSC0003DMG400019897
RefSeq:XP_006366961.1	SEG:seg	UniParc:UPI0002948463	UniProt:M1BRH0	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019897]

Coordinates

chr7:-:4828418..4834638

Molecular Weight (calculated)

45688.8 Da

IEP (calculated)

8.882

GRAVY (calculated)

-1.257

Length

408 amino acids

Sequence
(BLAST)

001: MLEPETKTRQ LQNPSTSSPS AAAALLLAFK PRQVVLAESS KSNLVMAKKE QNQENKFGLQ QSILHYLHLN GFSKTLKYFL KETQTESDSW KSCSLSLEDL
101: YSKYLNNSTD NDTLSKGDKE PALCQDGMKG KNISSNDADS QEKVSKNKKK KRSEYNDIAI PDASHPESVD KSMKNGATAQ EVLADDKADV PLKKQKEKKK
201: KKTEEKPENV DPIDNDNNDL TVETNKKKKS KEKSGATDSK DSKKRKRLAS DENANQGVDG VETEESKRRK TEDLEESKAL CTDNGIEQNG EVVEANSNGN
301: NQDELNNSAK QKSSRKDFNG SAEPKTVNAF QRVKIDQVEF KDDRLKDNSY WAKDGADIGY GAKAQEVLGQ VKGRDFRHEK TKKKRGSYRG GIIDLQSHSV
401: KFNYSDEE

Best Arabidopsis Sequence Match ( AT5G57120.1 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKET KVKVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK
201: KEENVVENDE GVQETPVKET ETKENGNAEK SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE
301: KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.