Factsheet for Os12t0613500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0253300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	Os01t0253300-01	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G040600.1	Wheat	nucleus, plastid	64.06	57.98
TraesCS5D01G047700.1	Wheat	nucleus	63.84	57.66
TraesCS5B01G041800.1	Wheat	nucleus	63.17	57.29
HORVU5Hr1G009830.3	Barley	nucleus	63.17	53.8
KXG23990	Sorghum	plastid	63.39	51.73
Zm00001d041495_P005	Maize	plastid	56.92	45.05
CDY53983	Canola	nucleus	27.23	37.2
CDY32901	Canola	plastid	31.03	37.17
CDY52493	Canola	plastid	30.58	37.03
Bra035650.1-P	Field mustard	nucleus, plastid	30.8	36.6
KRH02764	Soybean	nucleus	27.9	36.02
KRH19114	Soybean	nucleus	29.24	35.03
AT5G57120.1	Thale cress	nucleus	24.78	33.64
Solyc07g008330.2.1	Tomato	nucleus	30.36	33.09
PGSC0003DMT400051236	Potato	nucleus	30.13	33.09
GSMUA_Achr7P07940_001	Banana	nucleus	38.17	30.76
VIT_11s0052g00300.t01	Wine grape	nucleus	25.89	25.61

Protein Annotations

MapMan:35.2	EntrezGene:4352781	ProteinID:ABA99396.2	EMBL:AK101273	ProteinID:BAF30283.1	ProteinID:BAT18064.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:IPR006594	InterPro:LisH	EnsemblPlantsGene:Os12g0613500
EnsemblPlants:Os12t0613500-01	PFAM:PF05022	PFscan:PS50896	PANTHER:PTHR23216	UniProt:Q2QM87	InterPro:SRP40_C
SignalP:SignalP-noTM	UniParc:UPI0000680C3B	RefSeq:XP_015619765.1	SEG:seg	:	:

Description

brassinosteroid receptor kinase (BRI1)-interacting protein 132, BRI1-interacting protein 132, brassinosteroid receptor kinase-interacting protein 132SRP40, C-terminal domain containing protein. (Os12t0613500-01);Similar to SRP40, C-terminal domain containing protein, expressed. (Os12t0613500-02)

Coordinates

chr12:+:25990073..25993156

Molecular Weight (calculated)

48091.7 Da

IEP (calculated)

9.505

GRAVY (calculated)

-1.053

Length

448 amino acids

Sequence
(BLAST)

001: MLFLPRQLAL SAAAAAAAMA KEESRKEKKA KTKAASSAAA VPDARRAAVV AAVAAFLESS GFPRALAALQ SEANLEAGSW RSSPVSLEEL VSGFLEDSSN
101: YAPGASINGS IEHEKTAAVV AEDAGKKKKK KGSDTKVSEA ENKVAEPSAV EKPSENADVE TKEKKQKKKS KKQENDEDVE ARLEKAESAI INKFETVDTL
201: KEDSKNGLVD VAPVEKGKKK KKGKSTPETS DKVDTGSTDA GADCAKGKGD AAEMEKDNNE KKSKKKLKKS KENVEVVENK EVAGKDSAPK SNDENNSGME
301: TEKGENGMPP SDNAVVGKKR KLEEVEGSNL PAKEDNTASQ KLSNGSSEDD GAKPNKRQKK SSEPKTVNAF QRVKLEDVKF ADDRLQDNSY WAKGGADSGY
401: GAKAQEVLGQ VRGRGFRHEK TKKKRGTYRG GQIDLQTHSI KFNDSDDE

Best Arabidopsis Sequence Match ( AT5G57120.1 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKET KVKVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK
201: KEENVVENDE GVQETPVKET ETKENGNAEK SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE
301: KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.