CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90948
CDX97257
CDY01921
CDY64806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57120.1	CDX90948	AT4G02150.1	21798944
AT5G57120.1	CDX97257	AT4G02150.1	21798944
AT5G57120.1	CDY01921	AT4G02150.1	21798944
AT5G57120.1	CDY64806	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035650.1-P	Field mustard	nucleus, plastid	81.82	81.17
CDY52493	Canola	plastid	78.34	79.19
AT5G57120.1	Thale cress	nucleus	53.21	60.3
CDY53983	Canola	nucleus	46.52	53.05
KRH19114	Soybean	nucleus	36.9	36.9
KRH02764	Soybean	nucleus	33.96	36.6
Solyc07g008330.2.1	Tomato	nucleus	35.83	32.6
PGSC0003DMT400051236	Potato	nucleus	34.76	31.86
Os12t0613500-01	Rice	nucleus	37.17	31.03
TraesCS5A01G040600.1	Wheat	nucleus, plastid	33.69	25.45
TraesCS5D01G047700.1	Wheat	nucleus	33.69	25.4
TraesCS5B01G041800.1	Wheat	nucleus	33.16	25.1
KXG23990	Sorghum	plastid	36.63	24.95
HORVU5Hr1G009830.3	Barley	nucleus	33.96	24.14
VIT_11s0052g00300.t01	Wine grape	nucleus	26.47	21.85
GSMUA_Achr7P07940_001	Banana	nucleus	31.55	21.22
Zm00001d041495_P005	Maize	plastid	31.82	21.02

Protein Annotations

MapMan:35.2	UniProt:A0A078H4U9	EnsemblPlants:CDY32901	ProteinID:CDY32901	ProteinID:CDY32901.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	EnsemblPlantsGene:GSBRNA2T00053057001	InterPro:IPR006594	InterPro:LisH	PFAM:PF05022
PFscan:PS50896	PANTHER:PTHR23216	SMART:SM00667	InterPro:SRP40_C	UniParc:UPI0004EC0E99	SEG:seg

Description

BnaC02g11850DBnaC02g11850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4U9]

Coordinates

chrLK032302:+:50091..52040

Molecular Weight (calculated)

42331.9 Da

IEP (calculated)

8.125

GRAVY (calculated)

-1.216

Length

374 amino acids

Sequence
(BLAST)

001: MPKTLATVPS RNTLNPALLA LTPRQVLISR PVMAKESKAL SLKSEQKALL LRSVAQYLER CGFSKCFKKL LSEAEIEKKE LNSALPDLEE VYGVFLNKSN
101: LEAVEVKDES GDQKKEVEEV SAMEGVDKVK KEKKKKKKVE VTEEEKVKET DAEIEDGVEE KKIKKKKKNK ESKVEVAKEE EVKETSGEIE EGVKEKKKKK
201: KNKSKATEAE TLLGDEEKVS KKRKRSEPEE ETKEQTEDDD EDSKRRKKEE IVAEDDIGVQ ETPVKENGNV EQSETKSTDK KSGKGLSNSK EPKKPFQRVN
301: VEEVVFTDDR LKDNSYWAKG GADSGYGAKA QEVLGQVRGR GFRHEKTKKK RGSYRGGEID LESHSVKFEY SDDE

Best Arabidopsis Sequence Match ( AT5G57120.1 )
(BLAST)

001: MGNESKTSAL ESEQKALLLR SVAQYLERCG FSKCFKKLLS EAEIEKKELN TSLPDLEEIF SEFLNKRDHE AAANGNTEAN VVEAVENVKK DKKKKKNKET
101: KVEVTEEEKV KETDAVIEDG VKEKKKKKET KVKVTEEEKV KETDAVIEDG VKEKKKKKSK SKSVEADDDK EKVSKKRKRS EPEETKEETE DDDEESKRRK
201: KEENVVENDE GVQETPVKET ETKENGNAEK SETKSTNQKS GKGLSNSKEP KKPFQRVNVD EIVYTENSNS YYSKGGAEIG YGLKAQEVLG QVRGRDFRHE
301: KTKKKRGSYR GGLIDQESHS TKFNNSDDEE

Arabidopsis Description

AT5g57120/MUL3_6 [Source:UniProtKB/TrEMBL;Acc:Q9LU74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.