Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G174700.1 | Wheat | nucleus | 98.31 | 98.31 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 38.98 | 65.09 |
| Os10t0503800-01 | Rice | nucleus | 46.33 | 61.65 |
| EER93970 | Sorghum | nucleus | 53.11 | 60.65 |
| PGSC0003DMT400055730 | Potato | cytosol | 16.95 | 57.69 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 57.63 | 53.68 |
| GSMUA_Achr11P... | Banana | nucleus | 57.63 | 52.04 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 55.37 | 51.04 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 50.85 | 50.56 |
| Solyc01g094370.2.1 | Tomato | plastid | 48.59 | 49.43 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 48.59 | 49.43 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 50.28 | 48.63 |
| CDY27356 | Canola | nucleus | 52.54 | 47.69 |
| CDY37068 | Canola | nucleus | 51.41 | 46.67 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 51.41 | 46.67 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 47.46 | 46.67 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 51.41 | 46.67 |
| KRH48177 | Soybean | plasma membrane | 51.41 | 45.96 |
| CDX74768 | Canola | nucleus | 49.72 | 45.83 |
| Bra004940.1-P | Field mustard | nucleus | 49.72 | 45.83 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 39.55 | 45.75 |
| KRH40491 | Soybean | cytosol | 46.89 | 45.36 |
| AT2G45820.1 | Thale cress | cytosol | 48.59 | 45.26 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 54.24 | 44.86 |
| CDY18898 | Canola | cytosol | 48.59 | 44.79 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 46.89 | 44.62 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 48.02 | 44.5 |
| CDY48933 | Canola | cytosol | 48.59 | 44.33 |
| Bra007589.1-P | Field mustard | nucleus | 48.59 | 44.33 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 48.59 | 43.88 |
| KRH65100 | Soybean | cytosol | 49.15 | 43.5 |
| AT3G61260.1 | Thale cress | nucleus | 51.98 | 43.4 |
| PGSC0003DMT400026584 | Potato | nucleus | 41.24 | 38.22 |
| Solyc10g017540.2.1 | Tomato | nucleus | 40.68 | 38.1 |
| TraesCS6D01G387000.1 | Wheat | cytosol, mitochondrion, nucleus | 35.03 | 36.9 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 53.67 | 35.45 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G164300.1 | EnsemblPlantsGene:TraesCS1D01G164300 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF4 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1D:+:235159515..235160782
Molecular Weight (calculated)
19266.7 Da
IEP (calculated)
5.294
GRAVY (calculated)
-0.805
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAKQDVA PPAPEPTEDV ADEKAAVPSP EESKALVVAE NDAEKPAATG GSHERDALLT RVATEKRISL IKAWEENEKA KAENKAVKLL ADITSWENSK
101: AAELEAELKK MQEQLEKKKA RCVEKLKNSA ATVHKEAEEK RAAAEVRRGE EIVAAEEAAA KYRAKGEAPK KLLFGRG
101: AAELEAELKK MQEQLEKKKA RCVEKLKNSA ATVHKEAEEK RAAAEVRRGE EIVAAEEAAA KYRAKGEAPK KLLFGRG
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.