Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G403500.1 | Wheat | nucleus | 83.93 | 82.46 |
| TraesCS6B01G447400.1 | Wheat | cytosol, mitochondrion, nucleus | 83.33 | 80.92 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 82.74 | 75.96 |
| Os02t0824500-01 | Rice | cytosol | 63.69 | 59.78 |
| OQU85995 | Sorghum | cytosol | 47.02 | 39.9 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 44.64 | 39.27 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 47.62 | 37.38 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 36.9 | 35.03 |
| AT4G00670.1 | Thale cress | nucleus | 19.64 | 26.83 |
| Bra000964.1-P | Field mustard | cytosol, mitochondrion, nucleus | 17.86 | 22.73 |
| CDX74343 | Canola | nucleus | 17.26 | 21.97 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 16.67 | 21.21 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G387000.1 | EnsemblPlantsGene:TraesCS6D01G387000 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF3 |
| PFAM:PF03763 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:464228469..464229510
Molecular Weight (calculated)
18618.1 Da
IEP (calculated)
10.058
GRAVY (calculated)
-1.033
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: METQQEPTKA GEPAGGGAGV LENGPPAPST AQQGPAAPPG SATDRDAVLA KVEMNRKLSM VKAWEENQKS KADNRAEHKM SSILSWENTK KAAVEAKLRT
101: REEKLEKKKA EYAEQMRNRV AMIHKEAEEQ RALVEARRQE EMIKYQETAA KHRSKGTTPA KKFLTCFG
101: REEKLEKKKA EYAEQMRNRV AMIHKEAEEQ RALVEARRQE EMIKYQETAA KHRSKGTTPA KKFLTCFG
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKEV EEEKKEGSVN RDAVLARVET EKRMSLIKAW
101: EEAEKCKVEN KAEKKLSSIG SWENNKKAAV EAELKKMEEQ LEKKKAEYVE QMKNKIAQIH KEAEEKRAMI EAKRGEEILK AEELAAKYRA TGTAPKKLFG
201: CM
101: EEAEKCKVEN KAEKKLSSIG SWENNKKAAV EAELKKMEEQ LEKKKAEYVE QMKNKIAQIH KEAEEKRAMI EAKRGEEILK AEELAAKYRA TGTAPKKLFG
201: CM
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.