Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000964.1-P | Field mustard | cytosol, mitochondrion, nucleus | 89.39 | 89.39 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 70.45 | 70.45 |
| AT4G00670.1 | Thale cress | nucleus | 56.82 | 60.98 |
| CDY05883 | Canola | mitochondrion | 25.0 | 27.5 |
| CDY69344 | Canola | cytosol | 24.24 | 24.62 |
| CDY27356 | Canola | nucleus | 28.79 | 19.49 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 26.52 | 19.44 |
| Os02t0824500-01 | Rice | cytosol | 25.76 | 18.99 |
| CDY37068 | Canola | nucleus | 28.03 | 18.97 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 28.03 | 18.97 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 24.24 | 18.18 |
| CDY48933 | Canola | cytosol | 26.52 | 18.04 |
| TraesCS6B01G447400.1 | Wheat | cytosol, mitochondrion, nucleus | 22.73 | 17.34 |
| TraesCS6D01G387000.1 | Wheat | cytosol, mitochondrion, nucleus | 21.97 | 17.26 |
| CDY18898 | Canola | cytosol | 25.0 | 17.19 |
| CDX74768 | Canola | nucleus | 25.0 | 17.19 |
| TraesCS6A01G403500.1 | Wheat | nucleus | 21.97 | 16.96 |
| CDX87157 | Canola | cytosol | 24.24 | 16.49 |
| CDX88048 | Canola | nucleus | 25.0 | 16.1 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 21.21 | 15.3 |
| OQU85995 | Sorghum | cytosol | 21.97 | 14.65 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 9.85 | 12.5 |
Protein Annotations
| EnsemblPlants:CDX74343 | EnsemblPlantsGene:GSBRNA2T00112146001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF2 |
| PFAM:PF03763 | ProteinID:CDX74343 | ProteinID:CDX74343.1 | SEG:seg | UniParc:UPI0004EE9BA1 | MapMan:35.2 |
Description
BnaA03g27040D
Coordinates
chrLK031800:-:2302957..2303503
Molecular Weight (calculated)
15167.1 Da
IEP (calculated)
9.904
GRAVY (calculated)
-1.058
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTKDNKGD EQVRNNNTKI LEIFQSQFLC DCCDTRLICR TEKKLLEISA WEKKQTTKIE SQLANTQRKM DSKKKEKAEK LRRKKAAVHA KAQEKKARVQ
101: TRRAQEILDA EDEAATFQAT GQIPNKSSCS CF
101: TRRAQEILDA EDEAATFQAT GQIPNKSSCS CF
001: MEPNIPIQRG DEQSKVIKAW KELKITKVNN KTQKKLLDIS GWEKKKTTKI ESELARIQRK MDSKKMEKSE KLRNEKAAVH AKAQKKKADV QTRRAQEILD
101: AEEAAARFQA AGKIPKKSSL SCF
101: AEEAAARFQA AGKIPKKSSL SCF
Arabidopsis Description
At4g00670 [Source:UniProtKB/TrEMBL;Acc:Q6IDB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.