Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48933 | Canola | cytosol | 92.22 | 85.57 |
| CDY69344 | Canola | cytosol | 46.11 | 63.85 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.33 | 63.46 |
| CDY05883 | Canola | mitochondrion | 41.11 | 61.67 |
| AT3G61260.1 | Thale cress | nucleus | 72.22 | 61.32 |
| CDY37068 | Canola | nucleus | 64.44 | 59.49 |
| CDY27356 | Canola | nucleus | 63.89 | 58.97 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 63.33 | 58.46 |
| CDX74768 | Canola | nucleus | 62.22 | 58.33 |
| CDY18898 | Canola | cytosol | 62.22 | 58.33 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 56.67 | 55.74 |
| Solyc01g094370.2.1 | Tomato | plastid | 53.33 | 55.17 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 53.33 | 55.17 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 46.67 | 54.9 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 60.56 | 54.77 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 53.33 | 54.55 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 58.33 | 53.57 |
| EES12557 | Sorghum | cytosol | 62.22 | 52.83 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 55.56 | 52.63 |
| KRH40491 | Soybean | cytosol | 53.33 | 52.46 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 51.67 | 52.25 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 55.0 | 51.56 |
| GSMUA_Achr11P... | Banana | nucleus | 56.11 | 51.53 |
| KRH48177 | Soybean | plasma membrane | 56.67 | 51.52 |
| KRH65100 | Soybean | cytosol | 55.56 | 50.0 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 57.78 | 49.52 |
| Zm00001d025932_P003 | Maize | mitochondrion | 55.0 | 49.5 |
| CDX87157 | Canola | cytosol | 53.33 | 49.48 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 57.78 | 48.6 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 57.78 | 48.6 |
| Os03t0111200-01 | Rice | nucleus | 46.67 | 48.0 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 51.11 | 47.67 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 50.56 | 47.64 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 50.56 | 47.64 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 46.67 | 47.46 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 46.67 | 47.46 |
| EER92997 | Sorghum | nucleus | 47.22 | 46.96 |
| CDX88048 | Canola | nucleus | 53.33 | 46.83 |
| EER93970 | Sorghum | nucleus | 39.44 | 45.81 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 47.22 | 45.7 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 46.11 | 45.36 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 44.44 | 45.2 |
| Zm00001d017386_P001 | Maize | cytosol | 46.67 | 45.16 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 43.89 | 45.14 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 43.89 | 45.14 |
| TraesCSU01G033600.1 | Wheat | cytosol | 43.33 | 44.57 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 47.22 | 44.5 |
| KXG31130 | Sorghum | cytosol | 48.33 | 44.39 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 49.44 | 42.58 |
| PGSC0003DMT400026584 | Potato | nucleus | 45.0 | 42.41 |
| Solyc10g017540.2.1 | Tomato | nucleus | 44.44 | 42.33 |
| Os02t0642200-01 | Rice | plasma membrane | 47.22 | 41.87 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 24.44 | 41.51 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 52.78 | 35.45 |
| Os10t0503800-01 | Rice | nucleus | 26.11 | 35.34 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 18.33 | 31.73 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 52.22 | 31.33 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 20.0 | 27.27 |
| CDX74343 | Canola | nucleus | 19.44 | 26.52 |
Protein Annotations
| EnsemblPlants:CDX71754 | EnsemblPlantsGene:GSBRNA2T00155452001 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF2 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:CDX71754 | ProteinID:CDX71754.1 | SEG:seg |
| UniParc:UPI0004EE7062 | MapMan:35.1 | : | : | : | : |
Description
BnaC08g31200D
Coordinates
chrLK031795:+:324808..326048
Molecular Weight (calculated)
19671.4 Da
IEP (calculated)
8.668
GRAVY (calculated)
-0.792
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEQKITLD TAPPAPAPAP APAPAREKTS DDSKALAIVE KPVEPAAPKK SSSSGSQDRD VKLADLSKEK TLAYVKAWED SEKSKAEHKA EKKISDILAW
101: ENSKKAAVEA QLKKIEEQLE NKKAEYAEKM KNKVAAIHKE AEERRAMIEA KRGEDVLKAE EMAAKFRATG IVPKATCGCF
101: ENSKKAAVEA QLKKIEEQLE NKKAEYAEKM KNKVAAIHKE AEERRAMIEA KRGEDVLKAE EMAAKFRATG IVPKATCGCF
001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
Arabidopsis Description
Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.