Factsheet for GSMUA_Achr5P12250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P00240_001
GSMUA_Achr1P03030_001
GSMUA_Achr4P25330_001
GSMUA_Achr5P10760_001
GSMUA_Achr5P12250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	GSMUA_Achr11P...	AT2G45820.1	21798944
AT2G45820.1	GSMUA_Achr1P00240_001	AT2G45820.1	21798944
AT2G45820.1	GSMUA_Achr1P03030_001	AT2G45820.1	21798944
AT2G45820.1	GSMUA_Achr4P25330_001	AT2G45820.1	21798944
AT2G45820.1	GSMUA_Achr5P10760_001	AT2G45820.1	21798944
AT2G45820.1	GSMUA_Achr5P12250_001	AT2G45820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00240_001	Banana	nucleus	69.89	67.71
PGSC0003DMT400055730	Potato	cytosol	18.82	67.31
GSMUA_Achr1P03030_001	Banana	nucleus	57.53	56.32
GSMUA_Achr7P04410_001	Banana	plasma membrane	51.61	56.14
TraesCS6B01G265700.2	Wheat	cytosol	57.53	56.02
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	59.68	55.78
TraesCS6A01G237200.2	Wheat	cytosol	57.53	55.44
GSMUA_Achr4P25330_001	Banana	nucleus	52.69	55.06
TraesCS6D01G219800.1	Wheat	cytosol	56.45	54.97
GSMUA_Achr11P...	Banana	nucleus	57.53	54.59
Solyc01g094370.2.1	Tomato	plastid	50.54	54.02
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	50.54	54.02
GSMUA_Achr3P14410_001	Banana	nucleus	47.31	53.66
Zm00001d025932_P003	Maize	mitochondrion	57.53	53.5
EES12557	Sorghum	cytosol	60.75	53.3
KXG31130	Sorghum	cytosol	53.23	50.51
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.61	50.26
TraesCS2A01G369800.1	Wheat	nucleus	56.45	50.0
VIT_15s0046g03180.t01	Wine grape	nucleus	52.15	49.49
Os03t0111200-01	Rice	nucleus	46.24	49.14
TraesCS2B01G386900.1	Wheat	nucleus	56.45	49.07
Zm00001d017386_P001	Maize	cytosol	48.92	48.92
TraesCS2D01G366300.2	Wheat	nucleus	55.91	48.6
CDY27356	Canola	nucleus	50.54	48.21
CDY37068	Canola	nucleus	50.0	47.69
KRH00705	Soybean	cytosol, nucleus, plastid	46.77	47.54
Os02t0642200-01	Rice	plasma membrane	51.61	47.29
CDX71754	Canola	cytosol, mitochondrion, nucleus	45.7	47.22
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	49.46	47.18
CDY06318	Canola	cytosol, nucleus, plastid	49.46	47.18
Solyc05g048820.2.1	Tomato	nucleus, plastid	38.71	47.06
CDY48933	Canola	cytosol	48.92	46.91
Bra007589.1-P	Field mustard	nucleus	48.92	46.91
TraesCS1A01G174700.1	Wheat	nucleus	44.62	46.89
TraesCS1D01G164300.1	Wheat	nucleus	44.62	46.89
CDY18898	Canola	cytosol	48.39	46.88
CDX74768	Canola	nucleus	48.39	46.88
Bra004940.1-P	Field mustard	nucleus	48.39	46.88
Os04t0533300-02	Rice	extracellular, plasma membrane	52.15	46.41
TraesCS4B01G393000.1	Wheat	cytosol	43.55	46.29
KRH40491	Soybean	cytosol	45.16	45.9
EER92997	Sorghum	nucleus	44.62	45.86
TraesCS5A01G554600.1	Wheat	cytosol	43.55	45.76
TraesCSU01G033600.1	Wheat	cytosol	43.01	45.71
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	44.62	45.36
AT2G45820.1	Thale cress	cytosol	46.24	45.26
HORVU4Hr1G089540.2	Barley	cytosol	42.47	45.14
KRH48177	Soybean	plasma membrane	47.85	44.95
KRH65100	Soybean	cytosol	47.31	44.0
EER93970	Sorghum	nucleus	36.56	43.87
Solyc10g017540.2.1	Tomato	nucleus	44.09	43.39
PGSC0003DMT400026584	Potato	nucleus	44.09	42.93
AT3G61260.1	Thale cress	nucleus	47.85	41.98
GSMUA_Achr11P...	Banana	cytosol	37.63	40.7
HORVU1Hr1G045920.1	Barley	nucleus	23.12	40.57
GSMUA_Achr5P10760_001	Banana	cytosol	56.45	39.18
Os10t0503800-01	Rice	nucleus	24.19	33.83
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	51.08	31.67

Protein Annotations

EnsemblPlants:GSMUA_Achr5P12250_001	EnsemblPlants:GSMUA_Achr5T12250_001	EnsemblPlantsGene:GSMUA_Achr5G12250_001	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil
PANTHER:PTHR31775	PANTHER:PTHR31775:SF5	PFAM:PF03763	PFAM:PF03766	SEG:seg	UniParc:UPI000296C6A4
UniProt:M0SXV4	MapMan:35.1	:	:	:	:

Description

Remorin [Source:GMGC_GENE;Acc:GSMUA_Achr5G12250_001]

Coordinates

chr5:-:8820416..8823441

Molecular Weight (calculated)

20842.9 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.700

Length

186 amino acids

Sequence
(BLAST)

001: MEEAGAKHEA EAPLRTAVAV KDVEEEKAPI PSPAERKLDD SDAVAIDESD EDASTEKSTE VSAESVLARL ETEKRLSLIK AWEDNEKTKV ENKVVKKLSS
101: IMVWEITRKA AVEAELKRKE EELEKKKAEY AEKIKNKIAL LHRFAEEKRA MVEARRGEEL LKVEEVAAKY RATGLAPKKL LGCFGP

Best Arabidopsis Sequence Match ( AT5G23750.3 )
(BLAST)

001: MTTRNRTSLP NISSSVSSNK NIVVPNIMAE EEPKKVTETV SEPTPTPEVP VEKPAAAADV APQEKPVAPP PVLPSPAPAE EKQEDSKAIV PVVPKEVEEE
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.