Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002842_P001 | |
| Zm00001d017386_P001 | |
| Zm00001d025932_P003 | |
| Zm00001d027330_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 75.0 | 75.38 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.5 | 71.15 |
| EES12557 | Sorghum | cytosol | 74.5 | 70.28 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 62.5 | 65.1 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 66.5 | 63.33 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 67.0 | 62.62 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 67.0 | 62.62 |
| Zm00001d017386_P001 | Maize | cytosol | 55.5 | 59.68 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 61.5 | 58.85 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 53.5 | 57.53 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 50.0 | 57.47 |
| Solyc01g094370.2.1 | Tomato | plastid | 49.5 | 56.9 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 49.5 | 55.0 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 51.5 | 54.21 |
| GSMUA_Achr11P... | Banana | nucleus | 52.5 | 53.57 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 49.0 | 53.55 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 51.5 | 52.82 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 47.0 | 52.81 |
| Bra007589.1-P | Field mustard | nucleus | 51.0 | 52.58 |
| CDY48933 | Canola | cytosol | 51.0 | 52.58 |
| CDY37068 | Canola | nucleus | 51.0 | 52.31 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 51.0 | 52.31 |
| KRH40491 | Soybean | cytosol | 47.5 | 51.91 |
| CDY27356 | Canola | nucleus | 50.5 | 51.79 |
| CDX74768 | Canola | nucleus | 49.0 | 51.04 |
| Bra004940.1-P | Field mustard | nucleus | 49.0 | 51.04 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 50.0 | 51.02 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 38.5 | 50.33 |
| AT2G45820.1 | Thale cress | cytosol | 47.5 | 50.0 |
| CDY18898 | Canola | cytosol | 48.0 | 50.0 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 45.5 | 49.73 |
| KRH48177 | Soybean | plasma membrane | 47.5 | 47.98 |
| KRH65100 | Soybean | cytosol | 47.0 | 47.0 |
| AT3G61260.1 | Thale cress | nucleus | 48.5 | 45.75 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 63.5 | 42.33 |
| PGSC0003DMT400026584 | Potato | nucleus | 39.5 | 41.36 |
| Solyc10g017540.2.1 | Tomato | nucleus | 38.0 | 40.21 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 53.0 | 39.55 |
Protein Annotations
| EnsemblPlants:Zm00001d025932_P003 | EnsemblPlants:Zm00001d025932_T003 | EnsemblPlantsGene:Zm00001d025932 | EntrezGene:100280835 | InterPro:Remorin_C | InterPro:Remorin_N |
| ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF13 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:AQK45055.1 |
| SEG:seg | UniParc:UPI0004DEC07C | UniProt:A0A1D6JAY4 | MapMan:35.1 | : | : |
Description
Remorin
Coordinates
chr10:-:134081688..134098842
Molecular Weight (calculated)
22045.3 Da
IEP (calculated)
8.417
GRAVY (calculated)
-0.877
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEEEAKKVE VEVEVTKAAP AKENAAEEKA VIPATEPPAA QEKPPAPADD SKALAIVENK STPEKPIAEK QGGSSIRDLA LARVETEKRN SLIKAWEDNE
101: KAKADNKATK KVSVILSWEN TKKANIEAEM KKIEEQLEKK KAEYAEKMKN KVAMIHREAE EKRAMVEAKR GEEVLKAEEM AAKYRATGHA PKKPIGCFGA
101: KAKADNKATK KVSVILSWEN TKKANIEAEM KKIEEQLEKK KAEYAEKMKN KVAMIHREAE EKRAMVEAKR GEEVLKAEEM AAKYRATGHA PKKPIGCFGA
001: MTTRNRTSLP NISSSVSSNK NIVVPNIMAE EEPKKVTETV SEPTPTPEVP VEKPAAAADV APQEKPVAPP PVLPSPAPAE EKQEDSKAIV PVVPKEVEEE
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.