Factsheet for VIT_15s0046g03180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00940.t01
VIT_15s0046g03180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	VIT_01s0026g00940.t01	AT1G10470.1	9771897
AT2G45820.1	VIT_15s0046g03180.t01	AT2G45820.1	21798944
AT3G61260.1	VIT_01s0026g00940.t01	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055730	Potato	cytosol	19.39	73.08
Solyc05g048820.2.1	Tomato	nucleus, plastid	50.0	64.05
CDY37068	Canola	nucleus	59.69	60.0
CDY06318	Canola	cytosol, nucleus, plastid	59.18	59.49
Bra004940.1-P	Field mustard	nucleus	58.16	59.38
CDX74768	Canola	nucleus	58.16	59.38
CDY18898	Canola	cytosol	58.16	59.38
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	58.67	58.97
CDY27356	Canola	nucleus	58.67	58.97
AT2G45820.1	Thale cress	cytosol	57.14	58.95
Solyc01g094370.2.1	Tomato	plastid	52.04	58.62
CDX71754	Canola	cytosol, mitochondrion, nucleus	53.57	58.33
VIT_16s0050g00080.t01	Wine grape	nucleus	58.16	58.16
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	51.53	58.05
KRH00705	Soybean	cytosol, nucleus, plastid	53.57	57.38
GSMUA_Achr11P...	Banana	nucleus	56.63	56.63
KRH48177	Soybean	plasma membrane	57.14	56.57
KRH40491	Soybean	cytosol	52.55	56.28
AT3G61260.1	Thale cress	nucleus	60.71	56.13
CDY48933	Canola	cytosol	55.1	55.67
Bra007589.1-P	Field mustard	nucleus	55.1	55.67
GSMUA_Achr1P00240_001	Banana	nucleus	54.08	55.21
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	54.59	53.77
TraesCS6D01G219800.1	Wheat	cytosol	52.04	53.4
GSMUA_Achr1P03030_001	Banana	nucleus	51.53	53.16
KRH65100	Soybean	cytosol	54.08	53.0
TraesCS6B01G265700.2	Wheat	cytosol	51.53	52.88
Os03t0111200-01	Rice	nucleus	46.94	52.57
TraesCS2A01G369800.1	Wheat	nucleus	56.12	52.38
GSMUA_Achr5P12250_001	Banana	cytosol	49.49	52.15
PGSC0003DMT400026584	Potato	nucleus	50.51	51.83
TraesCS6A01G237200.2	Wheat	cytosol	51.02	51.81
KXG31130	Sorghum	cytosol	51.02	51.02
EES12557	Sorghum	cytosol	55.1	50.94
TraesCS2B01G386900.1	Wheat	nucleus	55.1	50.47
TraesCS2D01G366300.2	Wheat	nucleus	55.1	50.47
Zm00001d025932_P003	Maize	mitochondrion	51.02	50.0
GSMUA_Achr4P25330_001	Banana	nucleus	44.9	49.44
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	45.92	49.18
EER92997	Sorghum	nucleus	45.41	49.17
EER93970	Sorghum	nucleus	38.78	49.03
Zm00001d017386_P001	Maize	cytosol	46.43	48.92
Solyc10g017540.2.1	Tomato	nucleus	46.94	48.68
TraesCS1D01G164300.1	Wheat	nucleus	43.88	48.59
TraesCS1A01G174700.1	Wheat	nucleus	43.88	48.59
VIT_02s0025g03780.t01	Wine grape	nucleus	45.92	48.13
TraesCS5A01G554600.1	Wheat	cytosol	43.37	48.02
TraesCSU01G033600.1	Wheat	cytosol	42.35	47.43
HORVU4Hr1G089540.2	Barley	cytosol	42.35	47.43
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.41	46.6
TraesCS4B01G393000.1	Wheat	cytosol	41.33	46.29
Os04t0533300-02	Rice	extracellular, plasma membrane	48.98	45.93
Os02t0642200-01	Rice	plasma membrane	47.45	45.81
HORVU1Hr1G045920.1	Barley	nucleus	22.45	41.51
GSMUA_Achr5P10760_001	Banana	cytosol	49.49	36.19
Os10t0503800-01	Rice	nucleus	24.49	36.09
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	48.47	31.67

Protein Annotations

EntrezGene:100241460	wikigene:100241460	MapMan:35.1	EMBL:AM486855	ProteinID:CAN75437	ProteinID:CAN75437.1
ProteinID:CBI40326	ProteinID:CBI40326.3	ncoils:Coil	UniProt:D7UC61	EMBL:FN596755	EntrezGene:LOC100241460
wikigene:LOC100241460	PFAM:PF03763	PFAM:PF03766	PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	InterPro:Remorin_C
InterPro:Remorin_N	TIGR:TC65056	UniParc:UPI00015CA70B	ArrayExpress:VIT_15s0046g03180	EnsemblPlantsGene:VIT_15s0046g03180	EnsemblPlants:VIT_15s0046g03180.t01
unigene:Vvi.7579	RefSeq:XP_002270914	RefSeq:XP_002270914.1	RefSeq:XP_002270957	RefSeq:XP_002270957.1	SEG:seg

Description

No Description!

Coordinates

chr15:+:19770857..19775219

Molecular Weight (calculated)

21540.6 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.803

Length

196 amino acids

Sequence
(BLAST)

001: MEKNVESDPN PPLASGPEFP PATTPADVKN DVALEKSVVP PPEVKADESK ALAVVEKTPD SAAKKTSGGS FERDVALANL EKEKQLSFIR AWEESEKSKV
101: DNKAQKKLSD VCAWENSKKA AVEANLKKIE EELEKKKAEY AEKMKNKVAL IHKQAEEKKA MIEARRGEEF LKAEEMAAKF RATGQTPKKV LGCFGG

Best Arabidopsis Sequence Match ( AT3G61260.1 )
(BLAST)

001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF

Arabidopsis Description

Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.