Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002842_P001 | |
| Zm00001d017386_P001 | |
| Zm00001d025932_P003 | |
| Zm00001d027330_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12557 | Sorghum | cytosol | 88.44 | 83.02 |
| Zm00001d025932_P003 | Maize | mitochondrion | 75.38 | 75.0 |
| PGSC0003DMT400055730 | Potato | cytosol | 19.1 | 73.08 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 70.35 | 66.67 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 70.85 | 65.89 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 70.85 | 65.89 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 63.32 | 65.62 |
| GSMUA_Achr11P... | Banana | nucleus | 61.31 | 62.24 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 53.77 | 61.49 |
| Zm00001d017386_P001 | Maize | cytosol | 56.78 | 60.75 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 54.77 | 60.56 |
| Solyc01g094370.2.1 | Tomato | plastid | 52.76 | 60.34 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 55.78 | 59.68 |
| CDY27356 | Canola | nucleus | 57.79 | 58.97 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 57.29 | 58.46 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 55.78 | 58.42 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 61.31 | 58.37 |
| CDX74768 | Canola | nucleus | 56.28 | 58.33 |
| Bra004940.1-P | Field mustard | nucleus | 56.28 | 58.33 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 56.78 | 57.95 |
| CDY37068 | Canola | nucleus | 56.78 | 57.95 |
| Bra007589.1-P | Field mustard | nucleus | 56.28 | 57.73 |
| CDY48933 | Canola | cytosol | 56.28 | 57.73 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 52.76 | 57.38 |
| CDY18898 | Canola | cytosol | 55.28 | 57.29 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 50.75 | 56.74 |
| AT2G45820.1 | Thale cress | cytosol | 53.77 | 56.32 |
| KRH40491 | Soybean | cytosol | 51.76 | 56.28 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 50.75 | 55.19 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 53.77 | 54.59 |
| KRH48177 | Soybean | plasma membrane | 54.27 | 54.55 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 41.21 | 53.59 |
| AT3G61260.1 | Thale cress | nucleus | 55.78 | 52.36 |
| KRH65100 | Soybean | cytosol | 51.76 | 51.5 |
| PGSC0003DMT400026584 | Potato | nucleus | 44.72 | 46.6 |
| Solyc10g017540.2.1 | Tomato | nucleus | 44.22 | 46.56 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 64.82 | 43.0 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 54.77 | 40.67 |
Protein Annotations
| EMBL:BT043148 | EMBL:EU964028 | EnsemblPlants:Zm00001d002842_P001 | EnsemblPlants:Zm00001d002842_T001 | EnsemblPlantsGene:Zm00001d002842 | EntrezGene:100304007 |
| InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF13 | PFAM:PF03763 |
| PFAM:PF03766 | ProteinID:ONM15488.1 | SEG:seg | UniParc:UPI00017B813C | UniProt:B4G1B0 | MapMan:35.1 |
Description
Remorin family protein
Coordinates
chr2:+:24286536..24291225
Molecular Weight (calculated)
21833.0 Da
IEP (calculated)
5.591
GRAVY (calculated)
-0.893
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEEAKKVE VEVTKEPEAA AKEDVADDKA VIPATDPPPP PPPADDSKAL AIVEKVADEP APEKPAPAKQ GGSNDRDLAL ARVETEKRNS LIKAWEENEK
101: TKAENKAAKK VSAILSWENT KKANIEAELK KIEEQLEKKK AEYAEKMKNK VAMIHKEAEE KRAMVEAKRG EEVLKAEEMA AKYRATGHAP KKLIGCFGA
101: TKAENKAAKK VSAILSWENT KKANIEAELK KIEEQLEKKK AEYAEKMKNK VAMIHKEAEE KRAMVEAKRG EEVLKAEEMA AKYRATGHAP KKLIGCFGA
001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
Arabidopsis Description
Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.