Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P25330_001 | Banana | nucleus | 66.84 | 71.35 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 64.21 | 63.54 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 56.32 | 62.57 |
| PGSC0003DMT400055730 | Potato | cytosol | 16.84 | 61.54 |
| GSMUA_Achr11P... | Banana | nucleus | 61.58 | 59.69 |
| Os03t0111200-01 | Rice | nucleus | 54.74 | 59.43 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 53.68 | 57.63 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 53.68 | 57.63 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 56.32 | 57.53 |
| TraesCSU01G033600.1 | Wheat | cytosol | 52.11 | 56.57 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 52.63 | 56.5 |
| EER92997 | Sorghum | nucleus | 53.68 | 56.35 |
| CDX74768 | Canola | nucleus | 56.84 | 56.25 |
| Bra004940.1-P | Field mustard | nucleus | 56.84 | 56.25 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 51.58 | 56.0 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 58.42 | 55.78 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 53.68 | 55.74 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 52.63 | 55.56 |
| CDY27356 | Canola | nucleus | 56.84 | 55.38 |
| CDY18898 | Canola | cytosol | 55.79 | 55.21 |
| CDY37068 | Canola | nucleus | 56.32 | 54.87 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 56.32 | 54.87 |
| AT2G45820.1 | Thale cress | cytosol | 54.74 | 54.74 |
| EES12557 | Sorghum | cytosol | 61.05 | 54.72 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 55.79 | 54.36 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 50.0 | 54.29 |
| KRH48177 | Soybean | plasma membrane | 56.32 | 54.04 |
| GSMUA_Achr3P14410_001 | Banana | nucleus | 46.32 | 53.66 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 58.95 | 53.33 |
| CDY48933 | Canola | cytosol | 54.21 | 53.09 |
| Bra007589.1-P | Field mustard | nucleus | 54.21 | 53.09 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 74.74 | 52.99 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 53.16 | 52.88 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 59.47 | 52.8 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 59.47 | 52.8 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 52.63 | 52.36 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 50.0 | 51.91 |
| KRH40491 | Soybean | cytosol | 50.0 | 51.91 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 52.63 | 51.81 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 47.37 | 51.72 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 53.16 | 51.53 |
| KRH65100 | Soybean | cytosol | 54.21 | 51.5 |
| Zm00001d025932_P003 | Maize | mitochondrion | 54.21 | 51.5 |
| AT3G61260.1 | Thale cress | nucleus | 57.37 | 51.42 |
| Solyc01g094370.2.1 | Tomato | plastid | 46.84 | 51.15 |
| EER93970 | Sorghum | nucleus | 41.58 | 50.97 |
| KXG31130 | Sorghum | cytosol | 52.11 | 50.51 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 40.53 | 50.33 |
| Zm00001d017386_P001 | Maize | cytosol | 48.95 | 50.0 |
| Os02t0642200-01 | Rice | plasma membrane | 50.0 | 46.8 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 46.84 | 46.6 |
| Os10t0503800-01 | Rice | nucleus | 32.11 | 45.86 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 48.95 | 44.5 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 24.21 | 43.4 |
| Solyc10g017540.2.1 | Tomato | nucleus | 42.63 | 42.86 |
| GSMUA_Achr11P... | Banana | cytosol | 38.42 | 42.44 |
| PGSC0003DMT400026584 | Potato | nucleus | 42.11 | 41.88 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 52.11 | 33.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P03030_001 | EnsemblPlants:GSMUA_Achr1T03030_001 | EnsemblPlantsGene:GSMUA_Achr1G03030_001 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil |
| PANTHER:PTHR31775 | PANTHER:PTHR31775:SF5 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | UniParc:UPI0002959A54 |
| UniProt:M0RWL1 | MapMan:35.2 | : | : | : | : |
Description
Remorin [Source:GMGC_GENE;Acc:GSMUA_Achr1G03030_001]
Coordinates
chr1:-:2441122..2444197
Molecular Weight (calculated)
21006.8 Da
IEP (calculated)
5.608
GRAVY (calculated)
-0.959
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEKPAKVE EEGPSEAAPP HPEAVKDVEE EKTAIVPAPE EKPDDSKALV AVEKVEDSST EKGSGSNDRD AALARVATEK RLSLIKAWEE NEKVKAENKA
101: IKKISSISAW EKSKKADVEA ELKKKEEELE KKKAEYAEQV KNKLALIHKQ AEEKRAIAEA KRGEEALKAE EKAAKYRATG LAPKKIFGFF
101: IKKISSISAW EKSKKADVEA ELKKKEEELE KKKAEYAEQV KNKLALIHKQ AEEKRAIAEA KRGEEALKAE EKAAKYRATG LAPKKIFGFF
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.