Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G265700.2 | Wheat | cytosol | 93.78 | 94.76 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 87.56 | 88.48 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 72.54 | 73.3 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.13 | 67.31 |
| KXG31130 | Sorghum | cytosol | 65.8 | 64.8 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 64.25 | 64.58 |
| Zm00001d017386_P001 | Maize | cytosol | 60.1 | 62.37 |
| Os02t0642200-01 | Rice | plasma membrane | 62.18 | 59.11 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 55.44 | 57.53 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 61.66 | 56.67 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 48.7 | 54.02 |
| GSMUA_Achr11P... | Banana | nucleus | 53.89 | 53.06 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 51.81 | 52.63 |
| CDY37068 | Canola | nucleus | 52.33 | 51.79 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 52.33 | 51.79 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 52.33 | 51.79 |
| CDY27356 | Canola | nucleus | 51.81 | 51.28 |
| Solyc01g094370.2.1 | Tomato | plastid | 46.11 | 51.15 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 47.67 | 51.11 |
| CDX74768 | Canola | nucleus | 50.78 | 51.04 |
| Bra004940.1-P | Field mustard | nucleus | 50.78 | 51.04 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 51.81 | 51.02 |
| CDY18898 | Canola | cytosol | 49.74 | 50.0 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 45.6 | 49.72 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 39.38 | 49.67 |
| CDY48933 | Canola | cytosol | 49.74 | 49.48 |
| Bra007589.1-P | Field mustard | nucleus | 49.74 | 49.48 |
| AT2G45820.1 | Thale cress | cytosol | 48.7 | 49.47 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 45.6 | 49.44 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 46.63 | 49.18 |
| KRH40491 | Soybean | cytosol | 46.11 | 48.63 |
| KRH48177 | Soybean | plasma membrane | 49.22 | 47.98 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 43.52 | 47.46 |
| KRH65100 | Soybean | cytosol | 48.7 | 47.0 |
| TraesCS6A01G403500.1 | Wheat | nucleus | 40.41 | 45.61 |
| AT3G61260.1 | Thale cress | nucleus | 49.74 | 45.28 |
| PGSC0003DMT400026584 | Potato | nucleus | 40.41 | 40.84 |
| Solyc10g017540.2.1 | Tomato | nucleus | 39.9 | 40.74 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 48.7 | 35.07 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G237200.2 | EnsemblPlantsGene:TraesCS6A01G237200 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF13 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6A:-:446729851..446731725
Molecular Weight (calculated)
20964.4 Da
IEP (calculated)
10.304
GRAVY (calculated)
-0.680
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEEAKKAV PAAAAPEAAA EKDVPVVIPP PPGAKPPAVA DDSKALVVVD SKAAEKPRPE KNIHRGSHER DVALAKVETE KMSSLIKAWV ENEKAKAENK
101: AAKKLSSILS WENTKKAAID AQLKRKEEEL EKKKAKYAEK MKNRKAIAHR EAEEKRAMVV ARRGEEVLKA EEMAAKYRAT GLAPKKLLGC FGA
101: AAKKLSSILS WENTKKAAID AQLKRKEEEL EKKKAKYAEK MKNRKAIAHR EAEEKRAMVV ARRGEEVLKA EEMAAKYRAT GLAPKKLLGC FGA
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.