Factsheet for Solyc10g017540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094370.2.1
Solyc05g006420.2.1
Solyc05g048820.2.1
Solyc10g017540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	Solyc05g006420.2.1	AT1G10470.1	9771897
AT2G45820.1	Solyc01g094370.2.1	AT2G45820.1	21798944
AT2G45820.1	Solyc05g048820.2.1	AT2G45820.1	21798944
AT2G45820.1	Solyc10g017540.2.1	AT2G45820.1	21798944
AT3G61260.1	Solyc05g006420.2.1	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026584	Potato	nucleus	80.42	79.58
Solyc01g094370.2.1	Tomato	plastid	56.61	61.49
Solyc05g048820.2.1	Tomato	nucleus, plastid	46.56	57.52
Solyc06g035910.1.1	Tomato	cytosol, mitochondrion, nucleus	19.05	50.0
VIT_15s0046g03180.t01	Wine grape	nucleus	48.68	46.94
KRH00705	Soybean	cytosol, nucleus, plastid	43.39	44.81
CDX71754	Canola	cytosol, mitochondrion, nucleus	42.33	44.44
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	46.56	44.22
GSMUA_Achr5P12250_001	Banana	cytosol	43.39	44.09
KRH48177	Soybean	plasma membrane	46.03	43.94
CDY06318	Canola	cytosol, nucleus, plastid	44.97	43.59
CDY27356	Canola	nucleus	44.97	43.59
CDY37068	Canola	nucleus	44.97	43.59
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	44.97	43.59
Solyc06g035920.2.1	Tomato	nucleus	42.33	43.24
KRH40491	Soybean	cytosol	41.8	43.17
Solyc03g025850.2.1	Tomato	nucleus	44.97	43.15
Bra007589.1-P	Field mustard	nucleus	43.92	42.78
CDY48933	Canola	cytosol	43.92	42.78
Bra004940.1-P	Field mustard	nucleus	43.39	42.71
CDX74768	Canola	nucleus	43.39	42.71
GSMUA_Achr1P03030_001	Banana	nucleus	42.86	42.63
KRH65100	Soybean	cytosol	44.97	42.5
CDY18898	Canola	cytosol	42.86	42.19
AT2G45820.1	Thale cress	cytosol	42.33	42.11
GSMUA_Achr11P...	Banana	nucleus	42.86	41.33
EER93970	Sorghum	nucleus	33.86	41.29
TraesCS6D01G219800.1	Wheat	cytosol	41.27	40.84
TraesCS1D01G164300.1	Wheat	nucleus	38.1	40.68
TraesCS1A01G174700.1	Wheat	nucleus	38.1	40.68
GSMUA_Achr1P00240_001	Banana	nucleus	41.27	40.62
TraesCSU01G033600.1	Wheat	cytosol	37.57	40.57
EES12557	Sorghum	cytosol	45.5	40.57
TraesCS6B01G265700.2	Wheat	cytosol	40.74	40.31
TraesCS2A01G369800.1	Wheat	nucleus	44.44	40.0
TraesCS4B01G393000.1	Wheat	cytosol	37.04	40.0
TraesCS6A01G237200.2	Wheat	cytosol	40.74	39.9
TraesCS2B01G386900.1	Wheat	nucleus	44.97	39.72
TraesCS2D01G366300.2	Wheat	nucleus	44.97	39.72
TraesCS5A01G554600.1	Wheat	cytosol	37.04	39.55
HORVU4Hr1G089540.2	Barley	cytosol	36.51	39.43
KXG31130	Sorghum	cytosol	40.74	39.29
Os03t0111200-01	Rice	nucleus	35.98	38.86
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.15	38.74
Zm00001d017386_P001	Maize	cytosol	37.57	38.17
Zm00001d025932_P003	Maize	mitochondrion	40.21	38.0
Os04t0533300-02	Rice	extracellular, plasma membrane	41.8	37.8
GSMUA_Achr4P25330_001	Banana	nucleus	35.45	37.64
EER92997	Sorghum	nucleus	35.98	37.57
AT3G61260.1	Thale cress	nucleus	41.27	36.79
HORVU1Hr1G045920.1	Barley	nucleus	20.63	36.79
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	35.45	36.61
Os02t0642200-01	Rice	plasma membrane	39.15	36.45
Os10t0503800-01	Rice	nucleus	21.16	30.08
GSMUA_Achr5P10760_001	Banana	cytosol	39.68	27.99
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	41.27	26.0
Solyc06g035900.1.1	Tomato	cytosol	11.64	25.29

Protein Annotations

EnsemblPlants:Solyc10g017540.2.1	EnsemblPlantsGene:Solyc10g017540.2	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31775	PANTHER:PTHR31775:SF2
PFAM:PF03763	SEG:seg	UniParc:UPI000276C394	UniProt:K4CYN2	MapMan:35.1	:

Description

No Description!

Coordinates

chr10:-:5527335..5529076

Molecular Weight (calculated)

21104.0 Da

IEP (calculated)

9.437

GRAVY (calculated)

-0.973

Length

189 amino acids

Sequence
(BLAST)

001: MEAEVATQIK QEPPLASITT PNDVVTPTPP PPPHHTTTTT LPHQPLTPQD TDVSSKKSSK GSLDRDIALS QLENEKRSSF IKAWEESKKS KVNNKAQKKL
101: SAVATWEKTH TAKLEAKLKQ LEDQLEHKKV EYAEKIKNEV ALIRKEGDEK RAEVEARRGE ELLKAEERAA TYRATGQTPK KKLLGCCSC

Best Arabidopsis Sequence Match ( AT5G23750.3 )
(BLAST)

001: MTTRNRTSLP NISSSVSSNK NIVVPNIMAE EEPKKVTETV SEPTPTPEVP VEKPAAAADV APQEKPVAPP PVLPSPAPAE EKQEDSKAIV PVVPKEVEEE
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.