Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G045920.1 | |
| HORVU2Hr1G091680.3 | |
| HORVU4Hr1G089540.2 | |
| HORVU6Hr1G060700.5 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G164300.1 | Wheat | nucleus | 65.09 | 38.98 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 65.09 | 38.98 |
| EER93970 | Sorghum | nucleus | 47.17 | 32.26 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 47.17 | 28.57 |
| Os10t0503800-01 | Rice | nucleus | 35.85 | 28.57 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 46.23 | 26.78 |
| Solyc01g094370.2.1 | Tomato | plastid | 42.45 | 25.86 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 42.45 | 25.86 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 42.45 | 25.28 |
| KRH40491 | Soybean | cytosol | 43.4 | 25.14 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 35.85 | 24.84 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 41.51 | 24.44 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 43.4 | 24.21 |
| GSMUA_Achr11P... | Banana | nucleus | 44.34 | 23.98 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 42.45 | 23.56 |
| AT2G45820.1 | Thale cress | cytosol | 41.51 | 23.16 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 40.57 | 23.12 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 41.51 | 22.92 |
| KRH48177 | Soybean | plasma membrane | 42.45 | 22.73 |
| CDY48933 | Canola | cytosol | 41.51 | 22.68 |
| Bra007589.1-P | Field mustard | nucleus | 41.51 | 22.68 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 41.51 | 22.45 |
| CDY18898 | Canola | cytosol | 40.57 | 22.4 |
| CDX74768 | Canola | nucleus | 40.57 | 22.4 |
| Bra004940.1-P | Field mustard | nucleus | 40.57 | 22.4 |
| CDY37068 | Canola | nucleus | 40.57 | 22.05 |
| CDY27356 | Canola | nucleus | 40.57 | 22.05 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 40.57 | 22.05 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 40.57 | 22.05 |
| KRH65100 | Soybean | cytosol | 40.57 | 21.5 |
| AT3G61260.1 | Thale cress | nucleus | 42.45 | 21.23 |
| Solyc10g017540.2.1 | Tomato | nucleus | 36.79 | 20.63 |
| PGSC0003DMT400026584 | Potato | nucleus | 36.79 | 20.42 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 34.91 | 20.22 |
| PGSC0003DMT400055730 | Potato | cytosol | 8.49 | 17.31 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 43.4 | 17.16 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 43.4 | 15.33 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G045920.1 | EnsemblPlantsGene:HORVU1Hr1G045920 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF4 |
| PFAM:PF03763 | SEG:seg | UniParc:UPI000B484F15 | UniProt:A0A287FDZ9 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr1H:-:334697381..334698308
Molecular Weight (calculated)
12170.8 Da
IEP (calculated)
12.048
GRAVY (calculated)
-1.225
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIKAWEEN EKAKVSRRAV KLLADITSWE NSKAAEMEAE LKKMQEQLEK KKARCVEKLK NSAATVRRRR SVRRPKRGAA RRSSPRRRPQ PSTAPRARPQ
101: RSCSSG
101: RSCSSG
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKEV EEEKKEGSVN RDAVLARVET EKRMSLIKAW
101: EEAEKCKVEN KAEKKLSSIG SWENNKKAAV EAELKKMEEQ LEKKKAEYVE QMKNKIAQIH KEAEEKRAMI EAKRGEEILK AEELAAKYRA TGTAPKKLFG
201: CM
101: EEAEKCKVEN KAEKKLSSIG SWENNKKAAV EAELKKMEEQ LEKKKAEYVE QMKNKIAQIH KEAEEKRAMI EAKRGEEILK AEELAAKYRA TGTAPKKLFG
201: CM
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.