Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G045920.1 | |
| HORVU2Hr1G091680.3 | |
| HORVU4Hr1G089540.2 | |
| HORVU6Hr1G060700.5 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G265700.2 | Wheat | cytosol | 74.35 | 74.35 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 74.35 | 74.35 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 73.3 | 72.54 |
| PGSC0003DMT400055730 | Potato | cytosol | 19.37 | 71.15 |
| Zm00001d017386_P001 | Maize | cytosol | 56.02 | 57.53 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 57.07 | 56.77 |
| KXG31130 | Sorghum | cytosol | 57.07 | 55.61 |
| Os02t0642200-01 | Rice | plasma membrane | 56.54 | 53.2 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 47.12 | 51.72 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 41.36 | 51.63 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 50.26 | 51.61 |
| Solyc01g094370.2.1 | Tomato | plastid | 46.6 | 51.15 |
| GSMUA_Achr11P... | Banana | nucleus | 49.21 | 47.96 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 44.5 | 47.22 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 46.6 | 46.84 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 43.46 | 46.63 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 43.98 | 45.9 |
| KRH40491 | Soybean | cytosol | 43.98 | 45.9 |
| CDY37068 | Canola | nucleus | 46.6 | 45.64 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 46.6 | 45.64 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 46.6 | 45.64 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 46.6 | 45.41 |
| CDY48933 | Canola | cytosol | 45.55 | 44.85 |
| Bra007589.1-P | Field mustard | nucleus | 45.55 | 44.85 |
| CDY27356 | Canola | nucleus | 45.55 | 44.62 |
| CDX74768 | Canola | nucleus | 44.5 | 44.27 |
| Bra004940.1-P | Field mustard | nucleus | 44.5 | 44.27 |
| AT2G45820.1 | Thale cress | cytosol | 43.46 | 43.68 |
| CDY18898 | Canola | cytosol | 43.46 | 43.23 |
| KRH48177 | Soybean | plasma membrane | 44.5 | 42.93 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 39.27 | 42.86 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 23.56 | 42.45 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 40.31 | 42.08 |
| KRH65100 | Soybean | cytosol | 43.98 | 42.0 |
| PGSC0003DMT400026584 | Potato | nucleus | 40.31 | 40.31 |
| Solyc10g017540.2.1 | Tomato | nucleus | 38.74 | 39.15 |
| AT3G61260.1 | Thale cress | nucleus | 42.93 | 38.68 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 54.97 | 35.0 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 46.07 | 32.84 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G060700.5 | EnsemblPlantsGene:HORVU6Hr1G060700 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF13 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | UniParc:UPI000B466EA7 | UniProt:A0A287UCT0 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:404561135..404562584
Molecular Weight (calculated)
21220.7 Da
IEP (calculated)
10.244
GRAVY (calculated)
-0.553
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: VHMRIANWFM CASAVACPAR HVFLSVPQGS VSQVIAPDFS NFAPVSCAEV AEKPQAEKKN THRGSHERDV ALAKVETEKM SSLIKAWVEN EKAKADNKAA
101: KKLSSILSWE NTKKATIDAQ LKRKEEELEK KKAEYAEKMK NKKAIAHREA EEKRAMVVAR RGEQVLKAEE MAAKYRATGL APKKLLGCFG A
101: KKLSSILSWE NTKKATIDAQ LKRKEEELEK KKAEYAEKMK NKKAIAHREA EEKRAMVVAR RGEQVLKAEE MAAKYRATGL APKKLLGCFG A
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.