Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G045920.1 | |
| HORVU2Hr1G091680.3 | |
| HORVU4Hr1G089540.2 | |
| HORVU6Hr1G060700.5 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G369800.1 | Wheat | nucleus | 53.67 | 76.67 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 53.33 | 74.77 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 53.33 | 74.77 |
| PGSC0003DMT400055730 | Potato | cytosol | 12.33 | 71.15 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 43.0 | 64.82 |
| EES12557 | Sorghum | cytosol | 45.0 | 63.68 |
| Zm00001d025932_P003 | Maize | mitochondrion | 42.33 | 63.5 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 41.67 | 59.81 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 36.33 | 56.77 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 35.0 | 54.97 |
| GSMUA_Achr11P... | Banana | nucleus | 35.0 | 53.57 |
| Solyc01g094370.2.1 | Tomato | plastid | 30.67 | 52.87 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 30.33 | 52.3 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 31.33 | 52.22 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 33.0 | 52.11 |
| Bra004940.1-P | Field mustard | nucleus | 33.33 | 52.08 |
| CDX74768 | Canola | nucleus | 33.33 | 52.08 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 33.67 | 51.79 |
| CDY37068 | Canola | nucleus | 33.67 | 51.79 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 33.67 | 51.79 |
| AT2G45820.1 | Thale cress | cytosol | 32.67 | 51.58 |
| CDY18898 | Canola | cytosol | 33.0 | 51.56 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 31.33 | 51.37 |
| CDY27356 | Canola | nucleus | 33.33 | 51.28 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 31.67 | 51.08 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 25.67 | 50.33 |
| Bra007589.1-P | Field mustard | nucleus | 32.33 | 50.0 |
| CDY48933 | Canola | cytosol | 32.33 | 50.0 |
| KRH40491 | Soybean | cytosol | 30.33 | 49.73 |
| KRH48177 | Soybean | plasma membrane | 32.33 | 48.99 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 29.0 | 48.88 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 31.67 | 48.47 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 28.0 | 48.0 |
| KRH65100 | Soybean | cytosol | 31.67 | 47.5 |
| AT3G61260.1 | Thale cress | nucleus | 31.67 | 44.81 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 15.33 | 43.4 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 25.33 | 41.53 |
| PGSC0003DMT400026584 | Potato | nucleus | 26.33 | 41.36 |
| Solyc10g017540.2.1 | Tomato | nucleus | 26.0 | 41.27 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 32.33 | 36.19 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G091680.3 | EnsemblPlantsGene:HORVU2Hr1G091680 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF13 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | UniParc:UPI000B46E499 | UniProt:A0A287IXE7 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:649203686..649207528
Molecular Weight (calculated)
18536.1 Da
IEP (calculated)
8.425
GRAVY (calculated)
-0.526
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXPAADEEK PPVDDSKALV VVEKVADEPV AEKLTDEKAA HGGSNDRDLA LARVESEKRN SLIKAWEENE
201: KTKAENKATK KVSAILSWEN TKKANIEAQL KKIEEQLEKK KAEYAEKMKN KAAMIHKEAE EKRAMVEAKK GEELLKAEEM AAKYRATGNS PKKVMGCFGA
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXPAADEEK PPVDDSKALV VVEKVADEPV AEKLTDEKAA HGGSNDRDLA LARVESEKRN SLIKAWEENE
201: KTKAENKATK KVSAILSWEN TKKANIEAQL KKIEEQLEKK KAEYAEKMKN KAAMIHKEAE EKRAMVEAKK GEELLKAEEM AAKYRATGNS PKKVMGCFGA
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.