Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P03030_001 | Banana | nucleus | 71.35 | 66.84 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 63.48 | 58.85 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 53.93 | 56.14 |
| PGSC0003DMT400055730 | Potato | cytosol | 15.73 | 53.85 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 55.06 | 52.69 |
| GSMUA_Achr11P... | Banana | nucleus | 57.3 | 52.04 |
| Os03t0111200-01 | Rice | nucleus | 51.12 | 52.0 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 52.25 | 51.67 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 50.56 | 50.85 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 50.56 | 50.85 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 56.74 | 50.75 |
| Bra004940.1-P | Field mustard | nucleus | 54.49 | 50.52 |
| CDX74768 | Canola | nucleus | 54.49 | 50.52 |
| EER92997 | Sorghum | nucleus | 51.12 | 50.28 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 51.69 | 50.27 |
| CDY37068 | Canola | nucleus | 55.06 | 50.26 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 55.06 | 50.26 |
| CDY27356 | Canola | nucleus | 54.49 | 49.74 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 54.49 | 49.74 |
| AT2G45820.1 | Thale cress | cytosol | 52.81 | 49.47 |
| EER93970 | Sorghum | nucleus | 42.7 | 49.03 |
| CDY18898 | Canola | cytosol | 52.81 | 48.96 |
| KRH48177 | Soybean | plasma membrane | 53.93 | 48.48 |
| EES12557 | Sorghum | cytosol | 57.3 | 48.11 |
| TraesCSU01G033600.1 | Wheat | cytosol | 47.19 | 48.0 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 47.19 | 48.0 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 47.19 | 48.0 |
| GSMUA_Achr3P14410_001 | Banana | nucleus | 43.82 | 47.56 |
| KRH40491 | Soybean | cytosol | 48.88 | 47.54 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 47.19 | 47.46 |
| Bra007589.1-P | Field mustard | nucleus | 51.69 | 47.42 |
| CDY48933 | Canola | cytosol | 51.69 | 47.42 |
| AT3G61260.1 | Thale cress | nucleus | 56.18 | 47.17 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 50.56 | 47.12 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 50.56 | 47.12 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 40.45 | 47.06 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 70.79 | 47.01 |
| Zm00001d025932_P003 | Maize | mitochondrion | 52.81 | 47.0 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 48.31 | 46.99 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 53.93 | 45.71 |
| Zm00001d017386_P001 | Maize | cytosol | 47.75 | 45.7 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 49.44 | 45.6 |
| Solyc01g094370.2.1 | Tomato | plastid | 44.38 | 45.4 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 49.44 | 44.9 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 53.93 | 44.86 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 53.93 | 44.86 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 43.82 | 44.83 |
| KRH65100 | Soybean | cytosol | 50.0 | 44.5 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 46.63 | 43.46 |
| Os02t0642200-01 | Rice | plasma membrane | 48.88 | 42.86 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 25.28 | 42.45 |
| KXG31130 | Sorghum | cytosol | 46.07 | 41.84 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 47.75 | 40.67 |
| GSMUA_Achr11P... | Banana | cytosol | 38.76 | 40.12 |
| Os10t0503800-01 | Rice | nucleus | 29.78 | 39.85 |
| PGSC0003DMT400026584 | Potato | nucleus | 38.2 | 35.6 |
| Solyc10g017540.2.1 | Tomato | nucleus | 37.64 | 35.45 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 48.88 | 29.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P25330_001 | EnsemblPlants:GSMUA_Achr4T25330_001 | EnsemblPlantsGene:GSMUA_Achr4G25330_001 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil |
| PANTHER:PTHR31775 | PANTHER:PTHR31775:SF5 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | UniParc:UPI000294B3CC |
| UniProt:M0SRZ4 | MapMan:35.2 | : | : | : | : |
Description
Remorin [Source:GMGC_GENE;Acc:GSMUA_Achr4G25330_001]
Coordinates
chr4:+:24899273..24901564
Molecular Weight (calculated)
20329.1 Da
IEP (calculated)
5.353
GRAVY (calculated)
-0.892
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEKLEAVK DVEEEKTAIV PASEKKPDDF KALAIVEQVE DPEKSSGDSD DRDAVLARIV AEKRLSLIKA WEENEKFKAE NKALKKISSI NAWENSKKAE
101: VEAELKKKEE ELEKKKAEYA EEVKNKIALI HKEAEGKRAV AESRRGEEVL KTEKKAAKYR ATELVPVLQR RLFDFFQS
101: VEAELKKKEE ELEKKKAEYA EEVKNKIALI HKEAEGKRAV AESRRGEEVL KTEKKAAKYR ATELVPVLQR RLFDFFQS
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.