Factsheet for GSMUA_Achr7P04410_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69344	Canola	cytosol	52.05	68.46
CDY05883	Canola	mitochondrion	43.86	62.5
PGSC0003DMT400037192	Potato	cytosol	69.59	60.1
GSMUA_Achr3P14410_001	Banana	nucleus	57.31	59.76
Solyc03g025850.2.1	Tomato	nucleus	68.42	59.39
GSMUA_Achr11P...	Banana	nucleus	67.84	59.18
Bra018025.1-P	Field mustard	cytosol, mitochondrion, nucleus	59.06	57.71
CDY71834	Canola	cytosol, mitochondrion, nucleus	58.48	56.82
Solyc06g035920.2.1	Tomato	nucleus	61.4	56.76
GSMUA_Achr1P03030_001	Banana	nucleus	62.57	56.32
VIT_16s0050g00080.t01	Wine grape	nucleus	64.33	56.12
GSMUA_Achr1P00240_001	Banana	nucleus	61.99	55.21
KRH35326	Soybean	nucleus	62.57	55.15
AT3G48940.1	Thale cress	nucleus	56.14	54.86
Bra026483.1-P	Field mustard	nucleus	62.57	54.31
Solyc06g035910.1.1	Tomato	cytosol, mitochondrion, nucleus	22.81	54.17
CDX87157	Canola	cytosol	61.4	54.12
GSMUA_Achr4P25330_001	Banana	nucleus	56.14	53.93
KRG91502	Soybean	nucleus	60.82	52.79
KRH38487	Soybean	nucleus	63.16	52.43
KRH09020	Soybean	nucleus	61.99	51.71
GSMUA_Achr5P12250_001	Banana	cytosol	56.14	51.61
CDX88048	Canola	nucleus	60.23	50.24
Bra009707.1-P	Field mustard	nucleus	60.23	50.24
AT5G23750.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	63.16	47.16
GSMUA_Achr11P...	Banana	cytosol	46.2	45.93
GSMUA_Achr5P10760_001	Banana	cytosol	59.65	38.06
Solyc06g035900.1.1	Tomato	cytosol	14.62	28.74

Protein Annotations

EnsemblPlants:GSMUA_Achr7P04410_001	EnsemblPlants:GSMUA_Achr7T04410_001	EnsemblPlantsGene:GSMUA_Achr7G04410_001	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil
PANTHER:PTHR31775	PANTHER:PTHR31775:SF5	PFAM:PF03763	PFAM:PF03766	SEG:seg	UniParc:UPI00029658EF
UniProt:M0TEN1	MapMan:35.1	:	:	:	:

Description

Remorin [Source:GMGC_GENE;Acc:GSMUA_Achr7G04410_001]

Coordinates

chr7:-:3356189..3358911

Molecular Weight (calculated)

18878.4 Da

IEP (calculated)

7.364

GRAVY (calculated)

-0.870

Length

171 amino acids

Sequence
(BLAST)

001: MAEEAEKVQV SVEPPPPAEE KPDDSKALAV VEKSASQETK SVGSSIDRDV ALAQVETEKK LSLIKAWEES EKTKAENKSQ KKLSAITSWE NSKKATLEAE
101: LKKIEEKIEN QKAEYAEKMK NKIAMIHKAA EEKKALVEAK RGEELLKAEE TAAKYRATGQ APKKGFSCFS A

Best Arabidopsis Sequence Match ( AT3G61260.1 )
(BLAST)

001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF

Arabidopsis Description

Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.