Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 25464976 plastid: 26371478 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037192 | Potato | cytosol | 89.34 | 88.89 |
| CDY69344 | Canola | cytosol | 49.24 | 74.62 |
| Solyc06g035920.2.1 | Tomato | nucleus | 64.97 | 69.19 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 59.39 | 68.42 |
| AT3G48940.1 | Thale cress | nucleus | 59.9 | 67.43 |
| Bra018025.1-P | Field mustard | cytosol, mitochondrion, nucleus | 59.39 | 66.86 |
| CDY05883 | Canola | mitochondrion | 40.61 | 66.67 |
| KRH35326 | Soybean | nucleus | 63.96 | 64.95 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 57.36 | 64.2 |
| VIT_16s0050g00080.t01 | Wine grape | nucleus | 62.94 | 63.27 |
| Solyc06g035910.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.84 | 62.5 |
| Bra026483.1-P | Field mustard | nucleus | 61.93 | 61.93 |
| CDX87157 | Canola | cytosol | 60.41 | 61.34 |
| KRG91502 | Soybean | nucleus | 60.91 | 60.91 |
| KRH38487 | Soybean | nucleus | 62.94 | 60.19 |
| KRH09020 | Soybean | nucleus | 62.44 | 60.0 |
| CDX88048 | Canola | nucleus | 60.91 | 58.54 |
| Bra009707.1-P | Field mustard | nucleus | 60.91 | 58.54 |
| Solyc01g094370.2.1 | Tomato | plastid | 50.25 | 56.9 |
| AT5G23750.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 64.47 | 55.46 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 42.13 | 54.25 |
| Solyc10g017540.2.1 | Tomato | nucleus | 43.15 | 44.97 |
| Solyc06g035900.1.1 | Tomato | cytosol | 15.74 | 35.63 |
Protein Annotations
| EMBL:AF123265 | EnsemblPlants:Solyc03g025850.2.1 | EnsemblPlantsGene:Solyc03g025850.2 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil |
| PANTHER:PTHR31775 | PANTHER:PTHR31775:SF5 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | UniParc:UPI00000A5750 |
| UniProt:Q9XEX8 | MapMan:35.1 | : | : | : | : |
Description
Remorin 1 [Source:UniProtKB/TrEMBL;Acc:Q9XEX8]
Coordinates
chr3:+:3247522..3249961
Molecular Weight (calculated)
21851.2 Da
IEP (calculated)
5.368
GRAVY (calculated)
-0.802
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELEAKKVE IVDPAPAQEP VEAPKEVVAD EKAIVEPAPP PPAEEKEKPD DSKALVVVEN KAEEAADEKK EGSIDRDAVL ARVATEKRLS LIKAWEESEK
101: SKAENKAQKK VSAIGAWENS KKANLESELK KMEEQLEKKK AIYTEKMKNK IALLHKEAEE KRAMIEAKRG EDLLKAEELA AKYRATGTAP KKILGIF
101: SKAENKAQKK VSAIGAWENS KKANLESELK KMEEQLEKKK AIYTEKMKNK IALLHKEAEE KRAMIEAKRG EDLLKAEELA AKYRATGTAP KKILGIF
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.