Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g025850.2.1 | Tomato | nucleus | 88.89 | 89.34 |
| CDY69344 | Canola | cytosol | 50.0 | 76.15 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 60.1 | 69.59 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.18 | 69.23 |
| CDY05883 | Canola | mitochondrion | 41.41 | 68.33 |
| AT3G48940.1 | Thale cress | nucleus | 59.6 | 67.43 |
| Bra018025.1-P | Field mustard | cytosol, mitochondrion, nucleus | 59.6 | 67.43 |
| KRH35326 | Soybean | nucleus | 63.64 | 64.95 |
| VIT_16s0050g00080.t01 | Wine grape | nucleus | 64.14 | 64.8 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 57.58 | 64.77 |
| KRG91502 | Soybean | nucleus | 62.63 | 62.94 |
| CDX87157 | Canola | cytosol | 61.11 | 62.37 |
| Bra026483.1-P | Field mustard | nucleus | 61.11 | 61.42 |
| KRH38487 | Soybean | nucleus | 63.13 | 60.68 |
| KRH09020 | Soybean | nucleus | 62.63 | 60.49 |
| CDX88048 | Canola | nucleus | 61.62 | 59.51 |
| Bra009707.1-P | Field mustard | nucleus | 61.62 | 59.51 |
| AT5G23750.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 65.15 | 56.33 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 49.49 | 56.32 |
| PGSC0003DMT400007918 | Potato | cytosol | 46.46 | 48.42 |
| PGSC0003DMT400026584 | Potato | nucleus | 42.42 | 43.98 |
Protein Annotations
| MapMan:35.1 | ProteinID:AAB49425 | ProteinID:AAB49425.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007154 | GO:GO:0007267 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0030246 | GO:GO:0048032 | UniProt:M1B4Z0 | PFAM:PF03763 |
| PFAM:PF03766 | EnsemblPlantsGene:PGSC0003DMG400014339 | PGSC:PGSC0003DMG400014339 | EnsemblPlants:PGSC0003DMT400037192 | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF5 |
| InterPro:Remorin_C | InterPro:Remorin_N | EMBL:U72489 | UniParc:UPI000294F72E | SEG:seg | : |
Description
Remorin [Source:PGSC_GENE;Acc:PGSC0003DMG400014339]
Coordinates
chr3:-:42895029..42897959
Molecular Weight (calculated)
21800.2 Da
IEP (calculated)
6.170
GRAVY (calculated)
-0.758
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELEAKKVE IVDPAPPAPG PVEAPKEVVA DEKAIVTPAL PPPAEEKEKP DDSKALVVVE TKAPEPADEK KEGSIDRDAV LARVATEKRV SLIKAWEESE
101: KSKAENKAQK KVSAIGAWEN SKKANLEAEL KKMEEQLEKK KAEYTEKMKN KIALLHKEAE EKRAMIEAKR GEDLLKAEEL AAKYRATGTA PKKILGIF
101: KSKAENKAQK KVSAIGAWEN SKKANLEAEL KKMEEQLEKK KAEYTEKMKN KIALLHKEAE EKRAMIEAKR GEDLLKAEEL AAKYRATGTA PKKILGIF
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.