Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 90.38 | 30.72 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 76.92 | 21.86 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 69.23 | 20.69 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 73.08 | 19.39 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 71.15 | 19.37 |
| KRH40491 | Soybean | cytosol | 67.31 | 19.13 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 73.08 | 19.1 |
| GSMUA_Achr11P... | Banana | nucleus | 71.15 | 18.88 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 69.23 | 18.85 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 67.31 | 18.82 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 69.23 | 18.75 |
| KRH48177 | Soybean | plasma membrane | 71.15 | 18.69 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 75.0 | 18.66 |
| Zm00001d025932_P003 | Maize | mitochondrion | 71.15 | 18.5 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 69.23 | 18.46 |
| CDY37068 | Canola | nucleus | 69.23 | 18.46 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 69.23 | 18.46 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 63.46 | 18.33 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 67.31 | 18.32 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 61.54 | 18.29 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 61.54 | 18.29 |
| TraesCSU01G033600.1 | Wheat | cytosol | 61.54 | 18.29 |
| Zm00001d017386_P001 | Maize | cytosol | 65.38 | 18.28 |
| PGSC0003DMT400037192 | Potato | cytosol | 69.23 | 18.18 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 67.31 | 18.13 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 61.54 | 18.08 |
| EER93970 | Sorghum | nucleus | 53.85 | 18.06 |
| KRH65100 | Soybean | cytosol | 69.23 | 18.0 |
| CDY27356 | Canola | nucleus | 67.31 | 17.95 |
| EES12557 | Sorghum | cytosol | 73.08 | 17.92 |
| Os03t0111200-01 | Rice | nucleus | 59.62 | 17.71 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 71.15 | 17.62 |
| AT2G45820.1 | Thale cress | cytosol | 63.46 | 17.37 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 71.15 | 17.29 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 71.15 | 17.29 |
| PGSC0003DMT400026584 | Potato | nucleus | 63.46 | 17.28 |
| Os02t0642200-01 | Rice | plasma membrane | 67.31 | 17.24 |
| CDX74768 | Canola | nucleus | 63.46 | 17.19 |
| Bra004940.1-P | Field mustard | nucleus | 63.46 | 17.19 |
| EER92997 | Sorghum | nucleus | 59.62 | 17.13 |
| CDY48933 | Canola | cytosol | 63.46 | 17.01 |
| Bra007589.1-P | Field mustard | nucleus | 63.46 | 17.01 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 57.69 | 16.95 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 57.69 | 16.95 |
| PGSC0003DMT400007918 | Potato | cytosol | 61.54 | 16.84 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 61.54 | 16.84 |
| CDY18898 | Canola | cytosol | 61.54 | 16.67 |
| KXG31130 | Sorghum | cytosol | 61.54 | 16.33 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 53.85 | 15.73 |
| AT3G61260.1 | Thale cress | nucleus | 63.46 | 15.57 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 53.85 | 15.3 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 71.15 | 12.33 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 59.62 | 11.57 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 17.31 | 8.49 |
| Os10t0503800-01 | Rice | nucleus | 1.92 | 0.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055730 | EnsemblPlantsGene:PGSC0003DMG400021639 | InterPro:Remorin_C | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF13 | PFAM:PF03763 |
| PGSC:PGSC0003DMG400021639 | SEG:seg | UniParc:UPI000295DEB6 | UniProt:M1BYE6 | MapMan:35.2 | : |
Description
Remorin [Source:PGSC_GENE;Acc:PGSC0003DMG400021639]
Coordinates
chr5:+:43806985..43808176
Molecular Weight (calculated)
5813.1 Da
IEP (calculated)
10.113
GRAVY (calculated)
-0.946
Length
52 amino acids
Sequence
(BLAST)
(BLAST)
1: MKNKEALVHK EAEEKKATVE AKRGEQILRT EEMAAKYRAT GQNPKKLLGC VG
001: MTTRNRTSLP NISSSVSSNK NIVVPNIMAE EEPKKVTETV SEPTPTPEVP VEKPAAAADV APQEKPVAPP PVLPSPAPAE EKQEDSKAIV PVVPKEVEEE
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.