Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45820.1 | EER92997 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | EER93970 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | EES12557 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | KXG31130 | AT2G45820.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 81.77 | 80.87 |
| Os03t0111200-01 | Rice | nucleus | 76.24 | 78.86 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 74.59 | 77.14 |
| TraesCSU01G033600.1 | Wheat | cytosol | 74.59 | 77.14 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 75.14 | 76.84 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 72.38 | 74.86 |
| PGSC0003DMT400055730 | Potato | cytosol | 17.13 | 59.62 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 56.35 | 53.68 |
| EER93970 | Sorghum | nucleus | 45.3 | 52.9 |
| GSMUA_Achr11P... | Banana | nucleus | 55.8 | 51.53 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 50.28 | 51.12 |
| EES12557 | Sorghum | cytosol | 58.01 | 49.53 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 51.93 | 48.96 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 48.62 | 48.09 |
| Bra004940.1-P | Field mustard | nucleus | 50.83 | 47.92 |
| CDX74768 | Canola | nucleus | 50.83 | 47.92 |
| CDY27356 | Canola | nucleus | 51.38 | 47.69 |
| KXG31130 | Sorghum | cytosol | 51.38 | 47.45 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 46.96 | 47.22 |
| KRH48177 | Soybean | plasma membrane | 51.38 | 46.97 |
| CDY18898 | Canola | cytosol | 49.72 | 46.88 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 39.23 | 46.41 |
| CDY48933 | Canola | cytosol | 49.72 | 46.39 |
| Bra007589.1-P | Field mustard | nucleus | 49.72 | 46.39 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 49.72 | 46.15 |
| CDY37068 | Canola | nucleus | 49.72 | 46.15 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 49.72 | 46.15 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 44.2 | 45.98 |
| Solyc01g094370.2.1 | Tomato | plastid | 44.2 | 45.98 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 49.17 | 45.41 |
| KRH65100 | Soybean | cytosol | 49.72 | 45.0 |
| AT3G61260.1 | Thale cress | nucleus | 52.49 | 44.81 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 45.86 | 44.62 |
| AT2G45820.1 | Thale cress | cytosol | 46.41 | 44.21 |
| KRH40491 | Soybean | cytosol | 43.65 | 43.17 |
| Solyc10g017540.2.1 | Tomato | nucleus | 37.57 | 35.98 |
| PGSC0003DMT400026584 | Potato | nucleus | 37.02 | 35.08 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 49.72 | 33.58 |
| OQU85995 | Sorghum | cytosol | 30.94 | 28.28 |
Protein Annotations
| EnsemblPlants:EER92997 | EnsemblPlantsGene:SORBI_3001G535400 | EntrezGene:8059495 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil |
| PANTHER:PTHR31775 | PANTHER:PTHR31775:SF6 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:EER92997 | ProteinID:EER92997.1 |
| RefSeq:XP_002465999.1 | SEG:seg | unigene:Sbi.7791 | UniParc:UPI0001A826CA | UniProt:C5WMM5 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr1:+:79889289..79891611
Molecular Weight (calculated)
20044.1 Da
IEP (calculated)
7.521
GRAVY (calculated)
-0.624
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEEAKKVE VEATKDIAEE KAVVPLPPPP AKLADDDDSK AIVAVVKDAA EKPATIGGST ERDAYLAKIV SEKRLTLITA WEERAENRAA KKLAFITSWE
101: NAKKAEMEAE LKKIEEQLEK KKAAYEEKLK NKLAMLHKTA EERRAQTEAK RGEEIILAEE MAAKYRAKGE APTKLFGLLK A
101: NAKKAEMEAE LKKIEEQLEK KKAAYEEKLK NKLAMLHKTA EERRAQTEAK RGEEIILAEE MAAKYRAKGE APTKLFGLLK A
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.