CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
plasma membrane: 20209511
endoplasmic reticulum: 27224218

msms PMID: 20209511 doi

MZ Nouri, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba, Tsukuba, Japan.

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99225
KRH00705
KRH40491
KRH45761
KRH48177
KRH65100
KRH69443
KRH74701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	KRG99225	AT1G10470.1	9771897
AT2G45820.1	KRH45761	AT1G10470.1	9771897
AT2G45820.1	KRH69443	AT1G10470.1	9771897
AT2G45820.1	KRH74701	AT1G10470.1	9771897
AT2G45820.1	KRH00705	AT2G45820.1	21798944
AT2G45820.1	KRH40491	AT2G45820.1	21798944
AT2G45820.1	KRH48177	AT2G45820.1	21798944
AT2G45820.1	KRH65100	AT2G45820.1	21798944
AT3G61260.1	KRG99225	AT1G10470.1	9771897
AT3G61260.1	KRH45761	AT1G10470.1	9771897
AT3G61260.1	KRH69443	AT1G10470.1	9771897
AT3G61260.1	KRH74701	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65100	Soybean	cytosol	86.36	85.5
PGSC0003DMT400055730	Potato	cytosol	18.69	71.15
KRH00705	Soybean	cytosol, nucleus, plastid	62.12	67.21
KRH40491	Soybean	cytosol	59.6	64.48
AT2G45820.1	Thale cress	cytosol	60.61	63.16
CDY27356	Canola	nucleus	61.62	62.56
CDY37068	Canola	nucleus	61.62	62.56
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	61.62	62.56
CDX74768	Canola	nucleus	60.61	62.5
CDY18898	Canola	cytosol	60.61	62.5
Bra004940.1-P	Field mustard	nucleus	60.61	62.5
CDY06318	Canola	cytosol, nucleus, plastid	61.11	62.05
Solyc05g048820.2.1	Tomato	nucleus, plastid	46.46	60.13
KRH35326	Soybean	nucleus	57.07	58.25
KRG91502	Soybean	nucleus	57.07	57.36
VIT_15s0046g03180.t01	Wine grape	nucleus	56.57	57.14
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	50.0	56.9
Solyc01g094370.2.1	Tomato	plastid	50.0	56.9
Bra007589.1-P	Field mustard	nucleus	55.56	56.7
CDY48933	Canola	cytosol	55.56	56.7
CDX71754	Canola	cytosol, mitochondrion, nucleus	51.52	56.67
GSMUA_Achr1P03030_001	Banana	nucleus	54.04	56.32
KRH09020	Soybean	nucleus	58.08	56.1
KRH38487	Soybean	nucleus	57.58	55.34
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	54.55	54.27
GSMUA_Achr1P00240_001	Banana	nucleus	52.53	54.17
GSMUA_Achr4P25330_001	Banana	nucleus	48.48	53.93
Os03t0111200-01	Rice	nucleus	47.47	53.71
TraesCS2A01G369800.1	Wheat	nucleus	56.57	53.33
HORVU4Hr1G089540.2	Barley	cytosol	46.97	53.14
TraesCSU01G033600.1	Wheat	cytosol	46.97	53.14
GSMUA_Achr11P...	Banana	nucleus	52.53	53.06
TraesCS2B01G386900.1	Wheat	nucleus	57.07	52.8
TraesCS2D01G366300.2	Wheat	nucleus	57.07	52.8
KXG31130	Sorghum	cytosol	52.02	52.55
TraesCS5A01G554600.1	Wheat	cytosol	46.97	52.54
AT3G61260.1	Thale cress	nucleus	56.06	52.36
TraesCS4B01G393000.1	Wheat	cytosol	45.96	52.0
EES12557	Sorghum	cytosol	55.05	51.42
TraesCS1A01G174700.1	Wheat	nucleus	45.96	51.41
TraesCS1D01G164300.1	Wheat	nucleus	45.96	51.41
EER92997	Sorghum	nucleus	46.97	51.38
TraesCS6D01G219800.1	Wheat	cytosol	48.48	50.26
TraesCS6B01G265700.2	Wheat	cytosol	47.98	49.74
TraesCS6A01G237200.2	Wheat	cytosol	47.98	49.22
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	45.45	49.18
Zm00001d017386_P001	Maize	cytosol	45.45	48.39
GSMUA_Achr5P12250_001	Banana	cytosol	44.95	47.85
Zm00001d025932_P003	Maize	mitochondrion	47.98	47.5
Os04t0533300-02	Rice	extracellular, plasma membrane	50.0	47.37
KRH77513	Soybean	cytosol, nucleus, plastid	45.45	47.12
Os02t0642200-01	Rice	plasma membrane	47.98	46.8
PGSC0003DMT400026584	Potato	nucleus	44.44	46.07
Solyc10g017540.2.1	Tomato	nucleus	43.94	46.03
EER93970	Sorghum	nucleus	35.86	45.81
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	42.93	44.5
HORVU1Hr1G045920.1	Barley	nucleus	22.73	42.45
KRH41149	Soybean	extracellular	40.4	41.24
KRH59848	Soybean	extracellular	37.88	40.98
KRH27955	Soybean	nucleus	42.42	39.07
GSMUA_Achr5P10760_001	Banana	cytosol	50.0	36.94
Os10t0503800-01	Rice	nucleus	22.73	33.83
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	48.99	32.33

Protein Annotations

EMBL:ACUP02004210	EnsemblPlants:KRH48177	EnsemblPlantsGene:GLYMA_07G073100	EntrezGene:100802984	InterPro:Remorin_C	InterPro:Remorin_N
ncoils:Coil	PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766	ProteinID:KRH48177
ProteinID:KRH48177.1	SEG:seg	UniParc:UPI0001BA86A9	UniProt:I1KID4	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr7:-:6656839..6661250

Molecular Weight (calculated)

21655.0 Da

IEP (calculated)

8.987

GRAVY (calculated)

-0.721

Length

198 amino acids

Sequence
(BLAST)

001: MAELQTKVEP VTVPAPAPVD PEPPLAEAPP LEKKAVAVPP PVPAAAEETK ALVVVEKENE KIPEPVKKNA SGGSLDRDIA LAEIEKEKRL SNVKAWEESE
101: KSKAENKAQK QLSAVAAWEN SKKAALEAQL RKIEEQLEKK KAEYGEKMKN KIALVHKQAE EKRAMVEAKR GEEILKAEEI AAKHRATGTS PKKAFGCF

Best Arabidopsis Sequence Match ( AT3G61260.1 )
(BLAST)

001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF

Arabidopsis Description

Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.