CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99225
KRH00705
KRH40491
KRH45761
KRH48177
KRH65100
KRH69443
KRH74701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	KRG99225	AT1G10470.1	9771897
AT2G45820.1	KRH45761	AT1G10470.1	9771897
AT2G45820.1	KRH69443	AT1G10470.1	9771897
AT2G45820.1	KRH74701	AT1G10470.1	9771897
AT2G45820.1	KRH00705	AT2G45820.1	21798944
AT2G45820.1	KRH40491	AT2G45820.1	21798944
AT2G45820.1	KRH48177	AT2G45820.1	21798944
AT2G45820.1	KRH65100	AT2G45820.1	21798944
AT3G61260.1	KRG99225	AT1G10470.1	9771897
AT3G61260.1	KRH45761	AT1G10470.1	9771897
AT3G61260.1	KRH69443	AT1G10470.1	9771897
AT3G61260.1	KRH74701	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48177	Soybean	plasma membrane	85.5	86.36
PGSC0003DMT400055730	Potato	cytosol	18.0	69.23
KRH00705	Soybean	cytosol, nucleus, plastid	60.5	66.12
KRH40491	Soybean	cytosol	58.0	63.39
CDY18898	Canola	cytosol	57.0	59.38
AT2G45820.1	Thale cress	cytosol	56.0	58.95
CDX74768	Canola	nucleus	56.5	58.85
Bra004940.1-P	Field mustard	nucleus	56.5	58.85
CDY27356	Canola	nucleus	57.0	58.46
CDY37068	Canola	nucleus	57.0	58.46
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	57.0	58.46
CDY06318	Canola	cytosol, nucleus, plastid	56.5	57.95
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	49.5	56.9
Solyc01g094370.2.1	Tomato	plastid	49.5	56.9
Solyc05g048820.2.1	Tomato	nucleus, plastid	43.5	56.86
KRG91502	Soybean	nucleus	55.5	56.35
KRH35326	Soybean	nucleus	54.0	55.67
CDX71754	Canola	cytosol, mitochondrion, nucleus	50.0	55.56
CDY48933	Canola	cytosol	53.5	55.15
Bra007589.1-P	Field mustard	nucleus	53.5	55.15
KRH38487	Soybean	nucleus	56.5	54.85
KRH09020	Soybean	nucleus	56.0	54.63
GSMUA_Achr1P03030_001	Banana	nucleus	51.5	54.21
VIT_15s0046g03180.t01	Wine grape	nucleus	53.0	54.08
HORVU4Hr1G089540.2	Barley	cytosol	46.0	52.57
TraesCSU01G033600.1	Wheat	cytosol	46.0	52.57
GSMUA_Achr1P00240_001	Banana	nucleus	50.0	52.08
GSMUA_Achr11P...	Banana	nucleus	51.0	52.04
TraesCS5A01G554600.1	Wheat	cytosol	46.0	51.98
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	51.5	51.76
TraesCS4B01G393000.1	Wheat	cytosol	45.0	51.43
TraesCS2A01G369800.1	Wheat	nucleus	53.5	50.95
AT3G61260.1	Thale cress	nucleus	54.0	50.94
Os03t0111200-01	Rice	nucleus	44.5	50.86
TraesCS2B01G386900.1	Wheat	nucleus	54.0	50.47
TraesCS6D01G219800.1	Wheat	cytosol	48.0	50.26
GSMUA_Achr4P25330_001	Banana	nucleus	44.5	50.0
TraesCS2D01G366300.2	Wheat	nucleus	53.5	50.0
EER92997	Sorghum	nucleus	45.0	49.72
KXG31130	Sorghum	cytosol	48.5	49.49
TraesCS1D01G164300.1	Wheat	nucleus	43.5	49.15
TraesCS1A01G174700.1	Wheat	nucleus	43.5	49.15
EES12557	Sorghum	cytosol	52.0	49.06
TraesCS6A01G237200.2	Wheat	cytosol	47.0	48.7
KRH77513	Soybean	cytosol, nucleus, plastid	46.5	48.69
TraesCS6B01G265700.2	Wheat	cytosol	46.5	48.69
GSMUA_Achr5P12250_001	Banana	cytosol	44.0	47.31
Zm00001d025932_P003	Maize	mitochondrion	47.0	47.0
Os04t0533300-02	Rice	extracellular, plasma membrane	48.0	45.93
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	42.0	45.9
PGSC0003DMT400026584	Potato	nucleus	43.5	45.55
Os02t0642200-01	Rice	plasma membrane	46.0	45.32
Zm00001d017386_P001	Maize	cytosol	42.0	45.16
Solyc10g017540.2.1	Tomato	nucleus	42.5	44.97
EER93970	Sorghum	nucleus	34.5	44.52
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	42.0	43.98
HORVU1Hr1G045920.1	Barley	nucleus	21.5	40.57
KRH59848	Soybean	extracellular	37.0	40.44
KRH41149	Soybean	extracellular	38.5	39.69
KRH27955	Soybean	nucleus	42.5	39.53
GSMUA_Achr5P10760_001	Banana	cytosol	47.5	35.45
Os10t0503800-01	Rice	nucleus	22.0	33.08
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	47.5	31.67

Protein Annotations

EMBL:ACUP02001311	EnsemblPlants:KRH65100	EnsemblPlantsGene:GLYMA_03G013400	EntrezGene:100782224	InterPro:Remorin_C	InterPro:Remorin_N
ncoils:Coil	PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766	ProteinID:KRH65100
ProteinID:KRH65100.1	SEG:seg	UniParc:UPI0002339D58	UniProt:I1JKB3	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr3:-:1359835..1364365

Molecular Weight (calculated)

22035.6 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.667

Length

200 amino acids

Sequence
(BLAST)

001: MAELQTKVEP VPVPALAPVE PEPPLAEAPP LEQKAVVVPP PVPAAAEETK ALVVVEKEKE NEKIPEPVKK NATGGSLDRD IALAEIEKEK RLSNVKAWEE
101: SEKSKAENKA EKHLSAVAAW ENSKIAALEA QLRKIEEQME KKKAEYGEKM KNKIVLVHKQ AEEKRAMVEA KRGEEILKAE EIAAKHRATG TTPKKAFGCF

Best Arabidopsis Sequence Match ( AT3G61260.1 )
(BLAST)

001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF

Arabidopsis Description

Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.