Skip to main content
crop-pal logo
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • plastid 3
  • extracellular 1
  • mitochondrion 2
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:extracellular, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
EpiLoc:extracellular
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plasma membrane
PProwler:plastid
TargetP:plastid
YLoc:nucleus
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400055730 Potato cytosol 18.66 75.0
Zm00001d025932_P003 Maize mitochondrion 58.85 61.5
Zm00001d002842_P001 Maize extracellular, mitochondrion, plasma membrane 58.37 61.31
TraesCS2A01G369800.1 Wheat nucleus 61.24 60.95
TraesCS2D01G366300.2 Wheat nucleus 61.72 60.28
TraesCS2B01G386900.1 Wheat nucleus 61.72 60.28
EES12557 Sorghum cytosol 60.77 59.91
GSMUA_Achr1P00240_001 Banana nucleus 54.07 58.85
Os02t0642200-01 Rice plasma membrane 55.5 57.14
Solyc01g094370.2.1 Tomato plastid 46.41 55.75
PGSC0003DMT400000462 Potato cytosol, mitochondrion, nucleus, plastid 46.41 55.75
Solyc05g048820.2.1 Tomato nucleus, plastid 38.28 52.29
GSMUA_Achr5P12250_001 Banana cytosol 46.41 52.15
KRH00705 Soybean cytosol, nucleus, plastid 45.45 51.91
KRH40491 Soybean cytosol 45.45 51.91
CDY37068 Canola nucleus 48.33 51.79
CDY06318 Canola cytosol, nucleus, plastid 48.33 51.79
Bra039311.1-P Field mustard cytosol, nucleus, plastid 47.85 51.28
CDY27356 Canola nucleus 47.85 51.28
GSMUA_Achr11P... Banana nucleus 47.85 51.02
AT2G45820.1 Thale cress cytosol 45.93 50.53
Bra004940.1-P Field mustard nucleus 45.93 50.0
KRH48177 Soybean plasma membrane 47.37 50.0
CDX74768 Canola nucleus 45.93 50.0
CDY18898 Canola cytosol 45.45 49.48
CDX71754 Canola cytosol, mitochondrion, nucleus 42.58 49.44
VIT_15s0046g03180.t01 Wine grape nucleus 45.93 48.98
GSMUA_Achr1P03030_001 Banana nucleus 44.5 48.95
KRH65100 Soybean cytosol 45.93 48.0
GSMUA_Achr4P25330_001 Banana nucleus 40.67 47.75
Os02t0824500-01 Rice cytosol 40.19 46.93
Os03t0111200-01 Rice nucleus 39.23 46.86
Bra007589.1-P Field mustard nucleus 43.06 46.39
CDY48933 Canola cytosol 43.06 46.39
AT3G61260.1 Thale cress nucleus 45.45 44.81
Solyc10g017540.2.1 Tomato nucleus 37.8 41.8
HORVU2Hr1G091680.3 Barley cytosol, plasma membrane 59.81 41.67
PGSC0003DMT400026584 Potato nucleus 37.8 41.36
GSMUA_Achr5P10760_001 Banana cytosol 45.45 35.45
Os10t0503800-01 Rice nucleus 21.05 33.08
Protein Annotations
EnsemblPlants:Os04t0533300-02EnsemblPlantsGene:Os04g0533300EntrezGene:4336502InterPro:Remorin_CInterPro:Remorin_Nncoils:Coil
PANTHER:PTHR31775PANTHER:PTHR31775:SF13PFAM:PF03763PFAM:PF03766ProteinID:BAS90233.1SEG:seg
UniParc:UPI000393927AUniProt:A0A0N7KJF0MapMan:35.1:::
Description
REMORIN 1.5Similar to Remorin (pp34). (Os04t0533300-01);Similar to remorin. (Os04t0533300-02)
Coordinates
chr4:-:26664737..26668212
Molecular Weight (calculated)
23956.0 Da
IEP (calculated)
11.193
GRAVY (calculated)
-1.116
Length
209 amino acids
Sequence
(BLAST)
001: IIPPRKSLST AKPNRVRSRS RPGEGTLERS VRPPARRRRA PWLRRRPRRW RWRSPRRHPP LPLAIVEKVA DEPPAEKPAQ GGSNDRDVAL ARVETEKRNS
101: LIKAWEENEK TKAENKASKK LSAILSWENT KKANIEAQLK KIEEQLEKKK AEYAEKMKNK VAIVHKEAEE KRAMVEAKRG EEVLKAEEMA AKYRATGHAP
201: KKLIGCFGA
Best Arabidopsis Sequence Match ( AT5G23750.2 )
(BLAST)
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.