Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0642200-01 | |
| Os03t0111200-01 | |
| Os04t0533300-02 | |
| Os10t0503800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45820.1 | Os02t0642200-01 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | Os03t0111200-01 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | Os04t0533300-02 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | Os10t0503800-01 | AT2G45820.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92997 | Sorghum | nucleus | 78.86 | 76.24 |
| TraesCSU01G033600.1 | Wheat | cytosol | 76.0 | 76.0 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 76.0 | 76.0 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 76.57 | 75.71 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 74.29 | 74.29 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 74.86 | 71.58 |
| PGSC0003DMT400055730 | Potato | cytosol | 17.71 | 59.62 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 59.43 | 54.74 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 52.0 | 51.12 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 56.0 | 51.04 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 52.57 | 50.27 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 42.86 | 49.02 |
| GSMUA_Achr11P... | Banana | nucleus | 54.86 | 48.98 |
| CDY27356 | Canola | nucleus | 53.14 | 47.69 |
| KRH48177 | Soybean | plasma membrane | 53.71 | 47.47 |
| CDX74768 | Canola | nucleus | 52.0 | 47.4 |
| Bra004940.1-P | Field mustard | nucleus | 52.0 | 47.4 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 52.57 | 46.94 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 48.0 | 46.67 |
| CDY18898 | Canola | cytosol | 50.86 | 46.35 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 49.14 | 46.24 |
| Solyc01g094370.2.1 | Tomato | plastid | 45.71 | 45.98 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 45.14 | 45.4 |
| KRH40491 | Soybean | cytosol | 47.43 | 45.36 |
| AT2G45820.1 | Thale cress | cytosol | 49.14 | 45.26 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 50.29 | 45.13 |
| CDY37068 | Canola | nucleus | 50.29 | 45.13 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 50.29 | 45.13 |
| Os10t0503800-01 | Rice | nucleus | 34.29 | 45.11 |
| Bra007589.1-P | Field mustard | nucleus | 49.71 | 44.85 |
| CDY48933 | Canola | cytosol | 49.71 | 44.85 |
| KRH65100 | Soybean | cytosol | 50.86 | 44.5 |
| AT3G61260.1 | Thale cress | nucleus | 53.14 | 43.87 |
| Os02t0642200-01 | Rice | plasma membrane | 49.14 | 42.36 |
| Os02t0824500-01 | Rice | cytosol | 42.86 | 41.9 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 46.86 | 39.23 |
| Solyc10g017540.2.1 | Tomato | nucleus | 38.86 | 35.98 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 53.71 | 35.07 |
| PGSC0003DMT400026584 | Potato | nucleus | 37.71 | 34.55 |
Protein Annotations
| EMBL:AK060379 | EnsemblPlants:Os03t0111200-01 | EnsemblPlantsGene:Os03g0111200 | EntrezGene:4331361 | InterPro:Remorin_C | InterPro:Remorin_N |
| ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF6 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:ABF93596.1 |
| ProteinID:BAF10636.1 | ProteinID:BAS81928.1 | ProteinID:EAZ25323.1 | RefSeq:XP_015628930.1 | SEG:seg | UniParc:UPI0000DB4466 |
| UniProt:Q10SU0 | MapMan:35.2 | : | : | : | : |
Description
REMORIN 1.3Similar to Remorin. (Os03t0111200-01)
Coordinates
chr3:-:647000..649463
Molecular Weight (calculated)
19534.5 Da
IEP (calculated)
8.760
GRAVY (calculated)
-0.665
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAKKVEV TKDIAEEKAV VPLPTPPATE HDDSKAIVLV KEAEATGGSA ERDAYLAKIV SEKRLVLINA WEESEKARAE NRAAKKLSYI TSWENAKKAE
101: MEAELKRIEQ ELEKKKAAYE EKLKNKLALL HKTAEEKRAL TTAKRGEELI MAEEMAAKYR AKGEAPTKLF GLLKA
101: MEAELKRIEQ ELEKKKAAYE EKLKNKLALL HKTAEEKRAL TTAKRGEELI MAEEMAAKYR AKGEAPTKLF GLLKA
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.