Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G045920.1 | |
| HORVU2Hr1G091680.3 | |
| HORVU4Hr1G089540.2 | |
| HORVU6Hr1G060700.5 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G033600.1 | Wheat | cytosol | 98.29 | 98.29 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 97.14 | 96.05 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 94.86 | 94.86 |
| Os03t0111200-01 | Rice | nucleus | 76.0 | 76.0 |
| EER92997 | Sorghum | nucleus | 77.14 | 74.59 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 70.29 | 67.21 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.29 | 61.54 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 56.0 | 51.58 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 50.86 | 48.63 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 41.71 | 47.71 |
| Solyc01g094370.2.1 | Tomato | plastid | 47.43 | 47.7 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 48.0 | 47.19 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 28.57 | 47.17 |
| KRH48177 | Soybean | plasma membrane | 53.14 | 46.97 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 46.29 | 46.55 |
| GSMUA_Achr11P... | Banana | nucleus | 52.0 | 46.43 |
| KRH65100 | Soybean | cytosol | 52.57 | 46.0 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 49.71 | 45.31 |
| AT2G45820.1 | Thale cress | cytosol | 49.14 | 45.26 |
| CDY27356 | Canola | nucleus | 50.29 | 45.13 |
| CDX74768 | Canola | nucleus | 49.14 | 44.79 |
| Bra004940.1-P | Field mustard | nucleus | 49.14 | 44.79 |
| CDY18898 | Canola | cytosol | 48.57 | 44.27 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 49.14 | 44.1 |
| CDY37068 | Canola | nucleus | 49.14 | 44.1 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 49.14 | 44.1 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 45.14 | 43.89 |
| KRH40491 | Soybean | cytosol | 45.14 | 43.17 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 45.14 | 42.47 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 47.43 | 42.35 |
| Bra007589.1-P | Field mustard | nucleus | 46.29 | 41.75 |
| CDY48933 | Canola | cytosol | 46.29 | 41.75 |
| AT3G61260.1 | Thale cress | nucleus | 48.0 | 39.62 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 42.86 | 39.27 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 39.43 | 37.7 |
| Solyc10g017540.2.1 | Tomato | nucleus | 39.43 | 36.51 |
| PGSC0003DMT400026584 | Potato | nucleus | 38.29 | 35.08 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 50.29 | 32.84 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 48.0 | 28.0 |
Protein Annotations
| EMBL:AK355319 | EnsemblPlants:HORVU4Hr1G089540.2 | EnsemblPlantsGene:HORVU4Hr1G089540 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil |
| PANTHER:PTHR31775 | PANTHER:PTHR31775:SF6 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | UniParc:UPI00020048AE |
| UniProt:F2CUL7 | MapMan:35.2 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CUL7]
Coordinates
chrchr4H:-:642587402..642590164
Molecular Weight (calculated)
19596.5 Da
IEP (calculated)
7.758
GRAVY (calculated)
-0.736
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEEAKKVE VETTTATKDI AEEKAIVPVH DDSKAIVAVV KDAEGTRGSS ERDAYLTKIM SEKRTTLINA WEESEKARAE NRAAKNLSFI TSWEHAKEAE
101: MEAELKKIEE QLEKKKAAYK EKLKNKLAML HKSAEEKRAM AEAKRGEEII MAEEMAAKYR AKGEAPTKLF GLLKA
101: MEAELKKIEE QLEKKKAAYK EKLKNKLAML HKSAEEKRAM AEAKRGEEII MAEEMAAKYR AKGEAPTKLF GLLKA
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.