Factsheet for PGSC0003DMT400026584

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000462
PGSC0003DMT400026584
PGSC0003DMT400055730
PGSC0003DMT400058306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	PGSC0003DMT400058306	AT1G10470.1	9771897
AT2G45820.1	PGSC0003DMT400000462	AT2G45820.1	21798944
AT2G45820.1	PGSC0003DMT400026584	AT2G45820.1	21798944
AT2G45820.1	PGSC0003DMT400055730	AT2G45820.1	21798944
AT3G61260.1	PGSC0003DMT400058306	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g017540.2.1	Tomato	nucleus	79.58	80.42
PGSC0003DMT400055730	Potato	cytosol	17.28	63.46
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	57.07	62.64
VIT_15s0046g03180.t01	Wine grape	nucleus	51.83	50.51
KRH00705	Soybean	cytosol, nucleus, plastid	43.98	45.9
CDX71754	Canola	cytosol, mitochondrion, nucleus	42.41	45.0
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	46.6	44.72
KRH48177	Soybean	plasma membrane	46.07	44.44
KRH40491	Soybean	cytosol	42.41	44.26
GSMUA_Achr5P12250_001	Banana	cytosol	42.93	44.09
CDY06318	Canola	cytosol, nucleus, plastid	44.5	43.59
CDY27356	Canola	nucleus	44.5	43.59
CDY37068	Canola	nucleus	44.5	43.59
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	44.5	43.59
KRH65100	Soybean	cytosol	45.55	43.5
CDY48933	Canola	cytosol	43.98	43.3
Bra007589.1-P	Field mustard	nucleus	43.98	43.3
CDX74768	Canola	nucleus	43.46	43.23
Bra004940.1-P	Field mustard	nucleus	43.46	43.23
AT2G45820.1	Thale cress	cytosol	42.93	43.16
CDY18898	Canola	cytosol	42.93	42.71
PGSC0003DMT400037192	Potato	cytosol	43.98	42.42
TraesCS2A01G369800.1	Wheat	nucleus	46.6	42.38
GSMUA_Achr1P03030_001	Banana	nucleus	41.88	42.11
EER93970	Sorghum	nucleus	34.03	41.94
TraesCS6D01G219800.1	Wheat	cytosol	41.88	41.88
GSMUA_Achr11P...	Banana	nucleus	42.93	41.84
TraesCS1A01G174700.1	Wheat	nucleus	38.74	41.81
TraesCS1D01G164300.1	Wheat	nucleus	38.22	41.24
TraesCS2D01G366300.2	Wheat	nucleus	46.07	41.12
TraesCS2B01G386900.1	Wheat	nucleus	46.07	41.12
TraesCS6B01G265700.2	Wheat	cytosol	40.84	40.84
GSMUA_Achr1P00240_001	Banana	nucleus	40.84	40.62
PGSC0003DMT400007918	Potato	cytosol	40.31	40.53
TraesCS6A01G237200.2	Wheat	cytosol	40.84	40.41
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.31	40.31
EES12557	Sorghum	cytosol	44.5	40.09
KXG31130	Sorghum	cytosol	40.84	39.8
Zm00001d025932_P003	Maize	mitochondrion	41.36	39.5
TraesCSU01G033600.1	Wheat	cytosol	36.13	39.43
TraesCS4B01G393000.1	Wheat	cytosol	35.6	38.86
TraesCS5A01G554600.1	Wheat	cytosol	35.6	38.42
HORVU4Hr1G089540.2	Barley	cytosol	35.08	38.29
AT3G61260.1	Thale cress	nucleus	42.41	38.21
GSMUA_Achr4P25330_001	Banana	nucleus	35.6	38.2
Zm00001d017386_P001	Maize	cytosol	37.17	38.17
Os04t0533300-02	Rice	extracellular, plasma membrane	41.36	37.8
Os03t0111200-01	Rice	nucleus	34.55	37.71
Os02t0642200-01	Rice	plasma membrane	39.79	37.44
EER92997	Sorghum	nucleus	35.08	37.02
HORVU1Hr1G045920.1	Barley	nucleus	20.42	36.79
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	35.08	36.61
Os10t0503800-01	Rice	nucleus	21.99	31.58
GSMUA_Achr5P10760_001	Banana	cytosol	38.74	27.61
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	41.36	26.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400026584	EnsemblPlantsGene:PGSC0003DMG400010267	EntrezGene:102605024	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31775
PANTHER:PTHR31775:SF2	PFAM:PF03763	PGSC:PGSC0003DMG400010267	RefSeq:XP_006341797.1	SEG:seg	UniParc:UPI000296B6FC
UniProt:M1ANE2	MapMan:35.1	:	:	:	:

Description

Remorin 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400010267]

Coordinates

chr10:+:38814916..38818419

Molecular Weight (calculated)

21221.0 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.934

Length

191 amino acids

Sequence
(BLAST)

001: MEAEVPPQIK QEPPLASLAT PNDVVTPTPP PPPHHTTTTT TTLPHEPLTS QDTDVSSKKS SKGSLDRDIA LSQLENEKRS SFIKAWEESK KSKVNNKAQK
101: KLSAVATWEK THTAKLEAKL KQLEDQLEHK KAEYAEKIKN EVALIRQEAD EKRAVVEARQ GEEFLKAEET AARYRATGQT PKKQLLGCCG C

Best Arabidopsis Sequence Match ( AT3G61260.1 )
(BLAST)

001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF

Arabidopsis Description

Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.