Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45820.1 | EER92997 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | EER93970 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | EES12557 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | KXG31130 | AT2G45820.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055730 | Potato | cytosol | 18.06 | 53.85 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 60.65 | 53.11 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 60.0 | 52.54 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 32.26 | 47.17 |
| EER92997 | Sorghum | nucleus | 52.9 | 45.3 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 49.68 | 44.25 |
| Solyc01g094370.2.1 | Tomato | plastid | 49.03 | 43.68 |
| Os10t0503800-01 | Rice | nucleus | 36.77 | 42.86 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 49.03 | 42.7 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 41.94 | 42.48 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 50.97 | 41.58 |
| CDY27356 | Canola | nucleus | 52.26 | 41.54 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 47.1 | 39.89 |
| CDX74768 | Canola | nucleus | 49.03 | 39.58 |
| Bra004940.1-P | Field mustard | nucleus | 49.03 | 39.58 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 49.68 | 39.49 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 45.81 | 39.44 |
| AT3G61260.1 | Thale cress | nucleus | 53.55 | 39.15 |
| CDY18898 | Canola | cytosol | 48.39 | 39.06 |
| CDY37068 | Canola | nucleus | 49.03 | 38.97 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 49.03 | 38.97 |
| KRH40491 | Soybean | cytosol | 45.81 | 38.8 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 49.03 | 38.78 |
| GSMUA_Achr11P... | Banana | nucleus | 48.39 | 38.27 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 47.1 | 38.02 |
| AT2G45820.1 | Thale cress | cytosol | 46.45 | 37.89 |
| EES12557 | Sorghum | cytosol | 50.97 | 37.26 |
| KXG31130 | Sorghum | cytosol | 46.45 | 36.73 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 43.87 | 36.56 |
| CDY48933 | Canola | cytosol | 45.16 | 36.08 |
| Bra007589.1-P | Field mustard | nucleus | 45.16 | 36.08 |
| KRH48177 | Soybean | plasma membrane | 45.81 | 35.86 |
| KRH65100 | Soybean | cytosol | 44.52 | 34.5 |
| PGSC0003DMT400026584 | Potato | nucleus | 41.94 | 34.03 |
| Solyc10g017540.2.1 | Tomato | nucleus | 41.29 | 33.86 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 50.32 | 29.1 |
| OQU85995 | Sorghum | cytosol | 32.26 | 25.25 |
Protein Annotations
| EnsemblPlants:EER93970 | EnsemblPlantsGene:SORBI_3001G201300 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF4 |
| PFAM:PF03763 | ProteinID:EER93970 | ProteinID:EER93970.2 | SEG:seg | UniParc:UPI00081AB750 | UniProt:C5WWC6 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:18241216..18243635
Molecular Weight (calculated)
17184.2 Da
IEP (calculated)
10.477
GRAVY (calculated)
-0.905
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAKNAAG SEAEPTKDIA EEKTTSRRRR NAFLTRVVTA KKTSFIRAWE ESEKAKAENK AARRLASVAS WENSKVAEIE AELKKIHEQL EMKNAAQAEK
101: RKNSTAAVHR VAEEKRAAAV ARRGEEVIAA EEAAAKYRAR GQEPTRLFGL GHQQG
101: RKNSTAAVHR VAEEKRAAAV ARRGEEVIAA EEAAAKYRAR GQEPTRLFGL GHQQG
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.