Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002842_P001 | |
| Zm00001d017386_P001 | |
| Zm00001d025932_P003 | |
| Zm00001d027330_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31130 | Sorghum | cytosol | 74.73 | 70.92 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.28 | 65.38 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 62.9 | 61.26 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 62.37 | 60.1 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 61.29 | 59.69 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 60.75 | 56.78 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 57.53 | 56.02 |
| Zm00001d025932_P003 | Maize | mitochondrion | 59.68 | 55.5 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 56.99 | 55.21 |
| Os02t0642200-01 | Rice | plasma membrane | 59.68 | 54.68 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 50.0 | 48.95 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 48.92 | 48.92 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 47.85 | 48.63 |
| Bra004940.1-P | Field mustard | nucleus | 50.0 | 48.44 |
| CDX74768 | Canola | nucleus | 50.0 | 48.44 |
| CDY27356 | Canola | nucleus | 50.54 | 48.21 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 45.7 | 47.75 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 39.25 | 47.71 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 44.62 | 47.7 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 50.0 | 47.69 |
| CDY18898 | Canola | cytosol | 48.92 | 47.4 |
| CDY37068 | Canola | nucleus | 49.46 | 47.18 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 49.46 | 47.18 |
| Solyc01g094370.2.1 | Tomato | plastid | 44.09 | 47.13 |
| KRH40491 | Soybean | cytosol | 46.24 | 46.99 |
| GSMUA_Achr11P... | Banana | nucleus | 49.46 | 46.94 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 45.16 | 46.67 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 48.92 | 46.43 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 45.16 | 45.9 |
| AT2G45820.1 | Thale cress | cytosol | 46.77 | 45.79 |
| KRH48177 | Soybean | plasma membrane | 48.39 | 45.45 |
| CDY48933 | Canola | cytosol | 47.31 | 45.36 |
| Bra007589.1-P | Field mustard | nucleus | 47.31 | 45.36 |
| KRH65100 | Soybean | cytosol | 45.16 | 42.0 |
| AT3G61260.1 | Thale cress | nucleus | 46.77 | 41.04 |
| Solyc10g017540.2.1 | Tomato | nucleus | 38.17 | 37.57 |
| PGSC0003DMT400026584 | Potato | nucleus | 38.17 | 37.17 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 49.46 | 34.33 |
Protein Annotations
| EnsemblPlants:Zm00001d017386_P001 | EnsemblPlants:Zm00001d017386_T001 | EnsemblPlantsGene:Zm00001d017386 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil |
| PANTHER:PTHR31775 | PANTHER:PTHR31775:SF13 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:AQK73063.1 | SEG:seg |
| UniParc:UPI0002219758 | UniProt:A0A1D6HEJ0 | MapMan:35.2 | : | : | : |
Description
Remorin
Coordinates
chr5:-:194078458..194081886
Molecular Weight (calculated)
20604.0 Da
IEP (calculated)
10.006
GRAVY (calculated)
-0.612
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVVEAAPA AETAAKAVAE EEAGVTAPGP PVGGSNSKAL IVVDKVDDKP FSLNNMPRNS NDRDIALATV EIEKINSLIK AWEENEKAKA DNKTAKKQSI
101: ILSWENTKKA IIEAELKKKK EELEKKMAEY AEKMKNKKAI IHKKAEEKRA MVMAQHGEEI LKTEEMAAKY RATRVAPKKF LRCFRA
101: ILSWENTKKA IIEAELKKKK EELEKKMAEY AEKMKNKKAI IHKKAEEKRA MVMAQHGEEI LKTEEMAAKY RATRVAPKKF LRCFRA
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.