Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G265700.2 | Wheat | cytosol | 88.48 | 88.48 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 88.48 | 87.56 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 74.35 | 74.35 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.85 | 69.23 |
| KXG31130 | Sorghum | cytosol | 65.97 | 64.29 |
| Os02t0642200-01 | Rice | plasma membrane | 68.06 | 64.04 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 63.35 | 63.02 |
| Zm00001d017386_P001 | Maize | cytosol | 59.69 | 61.29 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 66.49 | 59.35 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 54.97 | 56.45 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 49.74 | 54.6 |
| Solyc01g094370.2.1 | Tomato | plastid | 48.17 | 52.87 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 52.36 | 52.63 |
| GSMUA_Achr11P... | Banana | nucleus | 53.93 | 52.55 |
| CDX74768 | Canola | nucleus | 52.36 | 52.08 |
| Bra004940.1-P | Field mustard | nucleus | 52.36 | 52.08 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 53.4 | 52.04 |
| CDY37068 | Canola | nucleus | 52.88 | 51.79 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 52.88 | 51.79 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 52.88 | 51.79 |
| CDY18898 | Canola | cytosol | 51.31 | 51.04 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 40.84 | 50.98 |
| KRH40491 | Soybean | cytosol | 48.69 | 50.82 |
| CDY27356 | Canola | nucleus | 51.83 | 50.77 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 47.12 | 50.56 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 47.64 | 50.56 |
| AT2G45820.1 | Thale cress | cytosol | 49.74 | 50.0 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 47.64 | 49.73 |
| KRH48177 | Soybean | plasma membrane | 50.26 | 48.48 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 44.5 | 48.02 |
| KRH65100 | Soybean | cytosol | 50.26 | 48.0 |
| CDY48933 | Canola | cytosol | 48.17 | 47.42 |
| Bra007589.1-P | Field mustard | nucleus | 48.17 | 47.42 |
| AT3G61260.1 | Thale cress | nucleus | 50.79 | 45.75 |
| TraesCS6D01G387000.1 | Wheat | cytosol, mitochondrion, nucleus | 39.27 | 44.64 |
| PGSC0003DMT400026584 | Potato | nucleus | 41.88 | 41.88 |
| Solyc10g017540.2.1 | Tomato | nucleus | 40.84 | 41.27 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 50.26 | 35.82 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G219800.1 | EnsemblPlantsGene:TraesCS6D01G219800 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF13 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6D:-:309954669..309957025
Molecular Weight (calculated)
20835.2 Da
IEP (calculated)
10.219
GRAVY (calculated)
-0.722
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEEAKKAV PAAAAPEATA EKDVPVVIPP PPGAKPPADD SKALVVVDSK VAEKPHPEKN IHRGSHERDV ALAKVETEKM SSLIKAWVEN EKAKAENKAA
101: KKLSSILSWE NTKKATIDAQ LKRKEEELEK KKAKYAEKMK NKKAIAHREA EEKRAMVVAR RGEEVLKAEE MAAKYRATGL APKKLLGCFG A
101: KKLSSILSWE NTKKATIDAQ LKRKEEELEK KKAKYAEKMK NKKAIAHREA EEKRAMVVAR RGEEVLKAEE MAAKYRATGL APKKLLGCFG A
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.