Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74343 | Canola | nucleus | 70.45 | 70.45 |
| Bra000964.1-P | Field mustard | cytosol, mitochondrion, nucleus | 68.94 | 68.94 |
| AT4G00670.1 | Thale cress | nucleus | 55.3 | 59.35 |
| CDY05883 | Canola | mitochondrion | 26.52 | 29.17 |
| CDY69344 | Canola | cytosol | 24.24 | 24.62 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 27.27 | 20.0 |
| Os02t0824500-01 | Rice | cytosol | 25.76 | 18.99 |
| CDY48933 | Canola | cytosol | 27.27 | 18.56 |
| CDY37068 | Canola | nucleus | 27.27 | 18.46 |
| CDY27356 | Canola | nucleus | 27.27 | 18.46 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 27.27 | 18.46 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 24.24 | 18.18 |
| CDY18898 | Canola | cytosol | 25.0 | 17.19 |
| CDX74768 | Canola | nucleus | 25.0 | 17.19 |
| TraesCS6B01G447400.1 | Wheat | cytosol, mitochondrion, nucleus | 21.97 | 16.76 |
| TraesCS6D01G387000.1 | Wheat | cytosol, mitochondrion, nucleus | 21.21 | 16.67 |
| CDX87157 | Canola | cytosol | 24.24 | 16.49 |
| TraesCS6A01G403500.1 | Wheat | nucleus | 21.21 | 16.37 |
| CDX88048 | Canola | nucleus | 25.0 | 16.1 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 21.21 | 15.3 |
| OQU85995 | Sorghum | cytosol | 21.97 | 14.65 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 9.09 | 11.54 |
Protein Annotations
| EnsemblPlants:CDX91900 | EnsemblPlantsGene:GSBRNA2T00153527001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF2 |
| PFAM:PF03763 | ProteinID:CDX91900 | ProteinID:CDX91900.1 | SEG:seg | UniParc:UPI0004EE78C6 | MapMan:35.2 |
Description
BnaC03g32020D
Coordinates
chrLK031870:+:686696..687269
Molecular Weight (calculated)
15164.1 Da
IEP (calculated)
8.905
GRAVY (calculated)
-0.953
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTKDNKGD EQVRNNYTKI LEIFQSQFPC DCCETCLICR TEKKLLEISA WEKKQTTKIE SQLANTQRKM DSKKKEKAEK LRSKKAAVHA KAQEKKAWVQ
101: IRRTQEILDA EDEAATFQAT GQIPNKSSCS CF
101: IRRTQEILDA EDEAATFQAT GQIPNKSSCS CF
001: MEPNIPIQRG DEQSKVIKAW KELKITKVNN KTQKKLLDIS GWEKKKTTKI ESELARIQRK MDSKKMEKSE KLRNEKAAVH AKAQKKKADV QTRRAQEILD
101: AEEAAARFQA AGKIPKKSSL SCF
101: AEEAAARFQA AGKIPKKSSL SCF
Arabidopsis Description
At4g00670 [Source:UniProtKB/TrEMBL;Acc:Q6IDB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.