Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20948 | Canola | nucleus | 96.76 | 94.47 |
| Bra018439.1-P | Field mustard | nucleus | 95.95 | 94.42 |
| AT1G10470.1 | Thale cress | nucleus | 88.26 | 84.17 |
| CDY34890 | Canola | nucleus | 88.26 | 83.85 |
| CDY07801 | Canola | nucleus | 89.07 | 83.02 |
| CDY37975 | Canola | nucleus | 84.62 | 82.61 |
| CDX93424 | Canola | nucleus | 84.21 | 82.21 |
| CDY66046 | Canola | nucleus | 83.81 | 81.82 |
| CDY45155 | Canola | nucleus | 70.04 | 75.88 |
| CDY30913 | Canola | nucleus | 71.26 | 73.95 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 42.91 | 59.22 |
| CDY70164 | Canola | nucleus | 43.32 | 58.47 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 43.32 | 58.47 |
| CDY36905 | Canola | nucleus | 43.32 | 58.47 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 43.32 | 58.15 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 42.91 | 57.92 |
| PGSC0003DMT400058306 | Potato | nucleus | 57.49 | 57.26 |
| KRH45761 | Soybean | nucleus | 51.42 | 56.95 |
| Solyc05g006420.2.1 | Tomato | nucleus | 57.09 | 56.18 |
| KRG99225 | Soybean | nucleus | 50.2 | 55.86 |
| VIT_01s0026g00940.t01 | Wine grape | nucleus | 49.8 | 55.66 |
| KRH69443 | Soybean | nucleus | 53.44 | 55.0 |
| KRH74701 | Soybean | nucleus | 53.85 | 54.51 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 38.87 | 54.24 |
| CDY00336 | Canola | nucleus | 41.7 | 54.21 |
| CDX84366 | Canola | nucleus | 41.7 | 54.21 |
| CDY65526 | Canola | cytosol | 34.01 | 53.16 |
| CDX72141 | Canola | cytosol | 27.13 | 52.76 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 39.27 | 52.72 |
| CDY71200 | Canola | cytosol | 26.72 | 51.97 |
| CDY59626 | Canola | cytosol | 26.72 | 51.97 |
| CDX68161 | Canola | cytosol | 41.3 | 51.78 |
| CDX96681 | Canola | cytosol | 43.32 | 51.69 |
| CDX83788 | Canola | cytosol | 44.13 | 51.42 |
| CDX75990 | Canola | cytosol | 26.32 | 51.18 |
| CDY35445 | Canola | cytosol | 33.2 | 50.93 |
| CDY22469 | Canola | cytosol | 32.39 | 50.63 |
| CDY41014 | Canola | nucleus | 43.32 | 50.0 |
| CDY26701 | Canola | nucleus | 42.51 | 49.3 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 31.17 | 45.56 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 40.08 | 45.41 |
| CDX79942 | Canola | nucleus | 38.87 | 44.65 |
| CDY23856 | Canola | nucleus | 38.46 | 44.19 |
| CDY35419 | Canola | nucleus | 37.65 | 43.06 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 38.46 | 42.79 |
| CDY22518 | Canola | nucleus | 37.25 | 42.4 |
| CDY06934 | Canola | cytosol | 38.06 | 42.34 |
| CDY06142 | Canola | cytosol | 38.06 | 39.83 |
| CDX67674 | Canola | cytosol | 37.65 | 39.74 |
| CDX72077 | Canola | cytosol | 37.65 | 39.57 |
| CDX76036 | Canola | nucleus | 36.03 | 39.56 |
| CDY30966 | Canola | cytosol | 35.63 | 37.93 |
Protein Annotations
| MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | GO:A0A078G283 | UniProt:A0A078G283 | EnsemblPlants:CDY20630 | ProteinID:CDY20630 |
| ProteinID:CDY20630.1 | InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00012810001 | InterPro:IPR001789 |
| PFAM:PF00072 | PFscan:PS50110 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF17 | SMART:SM00448 | SUPFAM:SSF52172 |
| InterPro:Sig_transdc_resp-reg_receiver | UniParc:UPI0004EEFF5A | SEG:seg | : | : | : |
Description
BnaC08g14280DBnaC08g14280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G283]
Coordinates
chrLK032110:+:348350..349767
Molecular Weight (calculated)
26866.2 Da
IEP (calculated)
4.383
GRAVY (calculated)
-0.251
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDGGVSCL RSSEMMSVGI GGMEPPPLDL DEVHVLAVDD SLVDRIVIER LLRITSCKVT AVDSGWRALE FLGLDNDKAS AEFDKLKVDM IITDYCMPGM
101: TGYELLKKIK ESSSFRQVPV VIMSSENVLT RIDRCLEEGA EDFLLKPVKL ADVKRLRNCL TGDVKLSNGN KRKLPEDSVT VDTSLPPPPP PSSLTLSTNS
201: SDSSPPLSPV EVFSSPLSSP EEDDDVLTSS PEESPIRRQK MGSPGLD
101: TGYELLKKIK ESSSFRQVPV VIMSSENVLT RIDRCLEEGA EDFLLKPVKL ADVKRLRNCL TGDVKLSNGN KRKLPEDSVT VDTSLPPPPP PSSLTLSTNS
201: SDSSPPLSPV EVFSSPLSSP EEDDDVLTSS PEESPIRRQK MGSPGLD
001: MARDGGVSCL RRSEMMSVGG IGGIESAPLD LDEVHVLAVD DSLVDRIVIE RLLRITSCKV TAVDSGWRAL EFLGLDNEKA SAEFDRLKVD LIITDYCMPG
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD
Arabidopsis Description
ARR4Two-component response regulator ARR4 [Source:UniProtKB/Swiss-Prot;Acc:O82798]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.