Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007295.1-P | Field mustard | cytosol | 88.09 | 87.71 |
| CDY06142 | Canola | cytosol | 88.09 | 87.71 |
| CDY65526 | Canola | cytosol | 55.32 | 82.28 |
| CDY30966 | Canola | cytosol | 80.43 | 81.47 |
| CDX76036 | Canola | nucleus | 77.45 | 80.89 |
| CDX67674 | Canola | cytosol | 78.72 | 79.06 |
| AT3G57040.1 | Thale cress | nucleus | 77.02 | 77.35 |
| CDY35419 | Canola | nucleus | 67.23 | 73.15 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 68.51 | 72.52 |
| CDY06934 | Canola | cytosol | 67.66 | 71.62 |
| CDY23856 | Canola | nucleus | 65.11 | 71.16 |
| CDY22518 | Canola | nucleus | 65.53 | 70.97 |
| CDX79942 | Canola | nucleus | 64.68 | 70.7 |
| PGSC0003DMT400076758 | Potato | nucleus | 60.85 | 63.27 |
| PGSC0003DMT400076726 | Potato | nucleus | 59.15 | 61.5 |
| GSMUA_Achr3P08680_001 | Banana | cytosol | 48.94 | 60.85 |
| GSMUA_Achr11P... | Banana | nucleus | 47.66 | 60.54 |
| Solyc10g079600.1.1 | Tomato | nucleus | 58.3 | 60.35 |
| PGSC0003DMT400007618 | Potato | nucleus | 54.89 | 60.28 |
| VIT_08s0007g05390.t01 | Wine grape | nucleus | 55.74 | 60.09 |
| KRH66808 | Soybean | nucleus | 61.7 | 58.47 |
| Solyc10g079700.1.1 | Tomato | nucleus | 59.15 | 58.16 |
| GSMUA_Achr5P08230_001 | Banana | nucleus | 47.66 | 58.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.36 | 58.0 |
| KRG95133 | Soybean | nucleus | 60.43 | 57.72 |
| GSMUA_Achr11P... | Banana | nucleus | 44.26 | 57.46 |
| TraesCS4B01G178900.1 | Wheat | cytosol | 34.47 | 57.45 |
| Os12t0139400-01 | Rice | nucleus | 46.81 | 54.73 |
| Os01t0952500-01 | Rice | cytosol | 52.77 | 53.45 |
| Os11t0143300-02 | Rice | cytosol | 46.81 | 52.88 |
| KXG27703 | Sorghum | nucleus | 44.68 | 51.98 |
| Zm00001d011849_P002 | Maize | cytosol | 51.49 | 51.93 |
| EES02064 | Sorghum | cytosol | 52.77 | 50.61 |
| CDY71200 | Canola | cytosol | 27.23 | 50.39 |
| CDY59626 | Canola | cytosol | 27.23 | 50.39 |
| CDX75990 | Canola | cytosol | 27.23 | 50.39 |
| CDX72141 | Canola | cytosol | 27.23 | 50.39 |
| TraesCS5B01G132900.2 | Wheat | cytosol | 48.51 | 49.14 |
| TraesCS5D01G140200.1 | Wheat | nucleus | 48.09 | 48.92 |
| CDY22469 | Canola | cytosol | 32.34 | 48.1 |
| TraesCS3B01G548600.1 | Wheat | cytosol | 48.51 | 47.5 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 36.17 | 47.49 |
| CDY35445 | Canola | cytosol | 32.34 | 47.2 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 36.6 | 46.99 |
| TraesCS5A01G131600.2 | Wheat | nucleus | 47.23 | 46.64 |
| CDY70164 | Canola | nucleus | 36.17 | 46.45 |
| CDY36905 | Canola | nucleus | 36.17 | 46.45 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 34.89 | 46.33 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 36.17 | 46.2 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 35.74 | 45.9 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 35.74 | 45.65 |
| HORVU3Hr1G108540.2 | Barley | nucleus | 47.23 | 44.76 |
| HORVU5Hr1G043090.1 | Barley | nucleus | 46.38 | 44.67 |
| Zm00001d023242_P001 | Maize | nucleus | 25.96 | 43.88 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 31.49 | 43.79 |
| CDY00336 | Canola | nucleus | 35.32 | 43.68 |
| CDX84366 | Canola | nucleus | 35.32 | 43.68 |
| CDX96681 | Canola | cytosol | 38.3 | 43.48 |
| CDX83788 | Canola | cytosol | 38.3 | 42.45 |
| TraesCS3D01G494600.1 | Wheat | nucleus | 48.09 | 42.01 |
| CDY26701 | Canola | nucleus | 37.87 | 41.78 |
| CDX68161 | Canola | cytosol | 34.47 | 41.12 |
| Zm00001d052476_P001 | Maize | nucleus | 21.28 | 40.98 |
| CDY41014 | Canola | nucleus | 37.02 | 40.65 |
| CDY45155 | Canola | nucleus | 38.72 | 39.91 |
| KXG22820 | Sorghum | endoplasmic reticulum | 45.53 | 38.35 |
| CDY30913 | Canola | nucleus | 38.72 | 38.24 |
| CDY20630 | Canola | nucleus | 39.57 | 37.65 |
| CDY20948 | Canola | nucleus | 39.57 | 36.76 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 34.04 | 36.7 |
| CDX93424 | Canola | nucleus | 39.15 | 36.36 |
| GSMUA_Achr8P09640_001 | Banana | cytosol | 27.23 | 36.36 |
| CDY37975 | Canola | nucleus | 39.15 | 36.36 |
| CDY66046 | Canola | nucleus | 38.72 | 35.97 |
| CDY34890 | Canola | nucleus | 39.57 | 35.77 |
| CDY07801 | Canola | nucleus | 39.57 | 35.09 |
Protein Annotations
| EnsemblPlants:CDX72077 | EnsemblPlantsGene:GSBRNA2T00155875001 | Gene3D:3.40.50.2300 | GO:A0A078C599 | GO:GO:0000160 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:CheY-like_superfamily | InterPro:IPR001789 | InterPro:Sig_transdc_resp-reg_receiver |
| PANTHER:PTHR43874 | PANTHER:PTHR43874:SF26 | PFAM:PF00072 | PFscan:PS50110 | ProteinID:CDX72077 | ProteinID:CDX72077.1 |
| SEG:seg | SMART:SM00448 | SUPFAM:SSF52172 | UniParc:UPI0004EDCB5B | MapMan:11.4.2.5 | : |
Description
BnaC08g27970D
Coordinates
chrLK031795:-:2237131..2238867
Molecular Weight (calculated)
26276.0 Da
IEP (calculated)
5.778
GRAVY (calculated)
-0.364
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMAAAEWKF HVLAVDDSLV DRKLIERLLQ KSSCQVTTVD SGYKALEFLG LRQGIESSHP TALSPSPQEV EVNLIITDYC MPGMTGYDLL KKLKESAAFK
101: SIPVVIMSSE NVPARISRCL EQGAEEFFLK PVRLADLNNL KPHMMKTKLK NQKLEEIEKP SNGTAAVEPE IKNPTEMEIK ILPLPSELEP KQVHLQEVQV
201: QQEELALSNN KRKTMEEGLS TDRPRPRLEG IATAV
101: SIPVVIMSSE NVPARISRCL EQGAEEFFLK PVRLADLNNL KPHMMKTKLK NQKLEEIEKP SNGTAAVEPE IKNPTEMEIK ILPLPSELEP KQVHLQEVQV
201: QQEELALSNN KRKTMEEGLS TDRPRPRLEG IATAV
001: MGMAAESQFH VLAVDDSLFD RKLIERLLQK SSCQVTTVDS GSKALEFLGL RQSTDSNDPN AFSKAPVNHQ VVEVNLIITD YCMPGMTGYD LLKKVKESSA
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV
Arabidopsis Description
ARR9Two-component response regulator ARR9 [Source:UniProtKB/Swiss-Prot;Acc:O80366]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.