Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40008 | Canola | nucleus | 97.2 | 96.41 |
| Bra026012.1-P | Field mustard | nucleus | 90.61 | 95.32 |
| AT1G16970.1 | Thale cress | nucleus | 88.14 | 86.15 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 67.71 | 65.97 |
| Solyc09g098230.2.1 | Tomato | nucleus | 64.74 | 62.98 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 28.67 | 60.84 |
| KRG93118 | Soybean | nucleus | 63.43 | 60.73 |
| EER95967 | Sorghum | nucleus | 60.63 | 58.6 |
| EER97823 | Sorghum | nucleus | 59.97 | 57.96 |
| GSMUA_Achr4P17800_001 | Banana | nucleus | 42.5 | 57.85 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 59.64 | 57.83 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 59.64 | 57.83 |
| Os07t0184900-01 | Rice | nucleus | 59.31 | 57.69 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 59.47 | 57.67 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 58.98 | 57.01 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 16.8 | 52.58 |
| Zm00001d007807_P006 | Maize | nucleus | 56.01 | 50.3 |
| KRH36355 | Soybean | mitochondrion, nucleus | 12.69 | 42.54 |
Protein Annotations
Description
BnaA06g11440DBnaA06g11440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCD4]
Coordinates
chrLK032346:-:377636..381647
Molecular Weight (calculated)
68533.0 Da
IEP (calculated)
5.620
GRAVY (calculated)
-0.420
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDPEDVFR DEDEDPESQF FQEKEASKEF VVYLIDSSPK MFSSTCPSED EKQESHFHIA VSCIAQSLKS HIINRSNDEI AICFFNTREK KNLQDLNGVY
101: VFNVPQRECI DRPTARLIKD FDLIEESFIK DIGSQNGIVS DSRENSLYSA LWVAQALLRK GSSKTADKRI FLFTNEDDPF GSMRISVKED MTRTTLQRAK
201: DAQDLGISIE LLPLIHHDKQ FDISLFYKDL IGLNGDELTE FMPSVGQKLE DMKDQLKKRV LAKRIAKRIT FMICDGVSIE LNGYALLRPA TPGTITWLDS
301: TTNLPIKVER SYVCADTGAI MQEPIQRIQP YMNRDVMFTA VELSELKKIS TGHLRLLGFK PLSCLKDYHN MKPSTFLYPS DKEVIGSTRA FIGLHRSMIQ
401: LGRFAVAFYG GTTPPRLVAL VAQDEIESDG GQMKEKPFLK RYLLHSKPGV AAPRASEDQL KKASALMRRL ELKDFSVCQF ANPALQRHYA MLQAIALDEN
501: ELGETRDETL PDEGGMNRPG VVKAIEEFKE SIYGDDSEEE SDSGAKEKSR KRKAADAGDY DFVELAKTGK LKDLTVVELK TYLTANNLPL SGKKDALINR
601: ILAHVSK
101: VFNVPQRECI DRPTARLIKD FDLIEESFIK DIGSQNGIVS DSRENSLYSA LWVAQALLRK GSSKTADKRI FLFTNEDDPF GSMRISVKED MTRTTLQRAK
201: DAQDLGISIE LLPLIHHDKQ FDISLFYKDL IGLNGDELTE FMPSVGQKLE DMKDQLKKRV LAKRIAKRIT FMICDGVSIE LNGYALLRPA TPGTITWLDS
301: TTNLPIKVER SYVCADTGAI MQEPIQRIQP YMNRDVMFTA VELSELKKIS TGHLRLLGFK PLSCLKDYHN MKPSTFLYPS DKEVIGSTRA FIGLHRSMIQ
401: LGRFAVAFYG GTTPPRLVAL VAQDEIESDG GQMKEKPFLK RYLLHSKPGV AAPRASEDQL KKASALMRRL ELKDFSVCQF ANPALQRHYA MLQAIALDEN
501: ELGETRDETL PDEGGMNRPG VVKAIEEFKE SIYGDDSEEE SDSGAKEKSR KRKAADAGDY DFVELAKTGK LKDLTVVELK TYLTANNLPL SGKKDALINR
601: ILAHVSK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.