Factsheet for GSMUA_Achr4P17800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P08680_001
GSMUA_Achr5P08230_001
GSMUA_Achr8P09640_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16970.1	GSMUA_Achr11P...	AT3G57040.1	18642946
AT1G16970.1	GSMUA_Achr11P...	AT3G57040.1	18642946
AT1G16970.1	GSMUA_Achr3P08680_001	AT3G57040.1	18642946
AT1G16970.1	GSMUA_Achr5P08230_001	AT3G57040.1	18642946
AT1G16970.1	GSMUA_Achr8P09640_001	AT3G57040.1	18642946
AT1G16970.1	GSMUA_AchrUn_...	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0062g01170.t01	Wine grape	nucleus	67.26	48.15
Solyc09g098230.2.1	Tomato	nucleus	63.45	45.35
KRG93118	Soybean	nucleus	61.88	43.53
CDY35134	Canola	nucleus	57.85	42.5
CDY40008	Canola	nucleus	58.07	42.32
Bra026012.1-P	Field mustard	nucleus	54.04	41.77
AT1G16970.1	Thale cress	nucleus	58.07	41.71
PGSC0003DMT400036518	Potato	mitochondrion	14.35	22.38
KRH36355	Soybean	mitochondrion, nucleus	2.47	6.08
GSMUA_Achr4P17790_001	Banana	nucleus	1.35	3.09

Protein Annotations

MapMan:14.4.1.1	Gene3D:2.40.290.10	Gene3D:3.40.50.410	Gene3D:4.10.970.10	GO:GO:0000723	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006303
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0042162	GO:GO:0043564	EnsemblPlantsGene:GSMUA_Achr4G17800_001	EnsemblPlants:GSMUA_Achr4P17800_001	EnsemblPlants:GSMUA_Achr4T17800_001
InterPro:IPR016194	InterPro:IPR027388	InterPro:IPR036465	InterPro:Ku70	InterPro:Ku70/Ku80_beta-barrel_dom	InterPro:Ku70_bridge/pillars_dom_sf
InterPro:Ku_N	UniProt:M0SPU3	PFAM:PF02735	PFAM:PF03731	PANTHER:PTHR12604	PANTHER:PTHR12604:SF2
SMART:SM00559	InterPro:SPOC-like_C_dom_sf	SUPFAM:SSF100939	SUPFAM:SSF53300	TIGRFAMs:TIGR00578	TMHMM:TMhelix
UniParc:UPI000294E6BC	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

ATP-dependent DNA helicase 2 subunit KU70 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17800_001]

Coordinates

chr4:-:18050551..18071693

Molecular Weight (calculated)

51020.6 Da

IEP (calculated)

7.492

GRAVY (calculated)

-0.192

Length

446 amino acids

Sequence
(BLAST)

001: MDLDPEGIFR DDSDSESELY EEKEPTKELA VYLIDASPKM FAPIADHENG NKETYFHVAI DCITRSLKTQ IIGRSYDEVA LCFFNTKEKK NLQDVNSVYV
101: FNVMERELID RPTAKLIKEF SSIEDKFMST IGSRYGVLPG SRENSLYNAF WVAQALLRKG SVKTSSKRIL IFTNDDDPFG SMTGAMKADM IRTTTQRAKD
201: AQDLGISFEL LPLSRPDEEF NVSMFYADMI GLEGTDISQF LPSASEKLED MKDQLRKRIF KKRKVRTLTF SIANGISIQV NTYALIRPTL PGATMWLDSV
301: TNLPLQTERS FICADTGALI QEPSKLFHPY KNQMVQFSKD QILEVKKISN SHLRLLGFKP LDCLKDYHNL RPSTFIFPTD EEVIGSTRIF IALYRSMLRL
401: KRFAFAFYGK SSNPRLVALV AQVIISYATV YCIVLYWRHL DIVLMI

Best Arabidopsis Sequence Match ( AT1G16970.1 )
(BLAST)

001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K

Arabidopsis Description

KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.