CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95133
KRH66808

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16970.1	KRG95133	AT3G57040.1	18642946
AT1G16970.1	KRH66808	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17790_001	Banana	nucleus	48.07	44.85
PGSC0003DMT400036518	Potato	mitochondrion	59.12	37.41
KRG93118	Soybean	nucleus	83.98	23.97
VIT_05s0062g01170.t01	Wine grape	nucleus	63.54	18.46
Solyc09g098230.2.1	Tomato	nucleus	60.22	17.47
EER97823	Sorghum	nucleus	57.46	16.56
EER95967	Sorghum	nucleus	56.91	16.4
TraesCS5D01G062500.2	Wheat	nucleus	56.35	16.29
TraesCS5B01G057400.1	Wheat	nucleus	56.35	16.29
TraesCS5A01G051500.1	Wheat	nucleus	56.35	16.29
HORVU5Hr1G012090.2	Barley	nucleus	56.35	16.24
Os07t0184900-01	Rice	nucleus	55.8	16.19
Bra026012.1-P	Field mustard	nucleus	50.28	15.77
Zm00001d007807_P006	Maize	nucleus	55.25	14.79
AT1G16970.1	Thale cress	nucleus	50.28	14.65
CDY40008	Canola	nucleus	43.65	12.91
CDY35134	Canola	nucleus	42.54	12.69
GSMUA_Achr4P17800_001	Banana	nucleus	6.08	2.47

Protein Annotations

Gene3D:1.10.1600.10	MapMan:14.4.1.1	UniProt:A0A0R0I7S2	EMBL:ACUP02006725	EnsemblPlantsGene:GLYMA_10G297800	GO:GO:0000723
GO:GO:0000784	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0004003	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006303	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042162	GO:GO:0043564
InterPro:IPR016194	EnsemblPlants:KRH36355	ProteinID:KRH36355	ProteinID:KRH36355.1	InterPro:Ku70	InterPro:Ku_C
PFAM:PF03730	PANTHER:PTHR12604	PANTHER:PTHR12604:SF2	InterPro:SPOC-like_C_dom_sf	SUPFAM:SSF100939	UniParc:UPI0006ED54A3

Description

hypothetical protein

Coordinates

chr10:+:51446459..51451239

Molecular Weight (calculated)

20522.2 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.623

Length

181 amino acids

Sequence
(BLAST)

001: MQKKQRECKH SFILVRQISC LRPEEVIQSG GQIEPPGMHI IYLPYSDDIR LVEEHYSDTS GMVNIASDDQ IKKAADLIKL IDLKDFSVCQ FTNPALQRHY
101: AVLQALALEE DDIPEMKDET LPDEEGLARP AVVRALEEFK TSVYGDNYEE ENKPGTGKPT EASKKQKAIA EFATKECENY D

Best Arabidopsis Sequence Match ( AT1G16970.1 )
(BLAST)

001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K

Arabidopsis Description

KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.