Factsheet for Zm00001d007807_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011849_P002
Zm00001d023242_P001
Zm00001d052476_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16970.1	Zm00001d011849_P002	AT3G57040.1	18642946
AT1G16970.1	Zm00001d023242_P001	AT3G57040.1	18642946
AT1G16970.1	Zm00001d052476_P001	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95967	Sorghum	nucleus	80.77	86.94
EER97823	Sorghum	nucleus	79.59	85.67
Os07t0184900-01	Rice	nucleus	72.04	78.04
TraesCS5B01G057400.1	Wheat	nucleus	71.89	77.64
TraesCS5D01G062500.2	Wheat	nucleus	71.6	77.32
TraesCS5A01G051500.1	Wheat	nucleus	71.6	77.32
HORVU5Hr1G012090.2	Barley	nucleus	71.15	76.59
PGSC0003DMT400036518	Potato	mitochondrion	27.96	66.08
GSMUA_Achr4P17790_001	Banana	nucleus	18.93	65.98
VIT_05s0062g01170.t01	Wine grape	nucleus	58.88	63.88
Solyc09g098230.2.1	Tomato	nucleus	55.92	60.58
Bra026012.1-P	Field mustard	nucleus	49.85	58.41
AT1G16970.1	Thale cress	nucleus	53.11	57.81
KRG93118	Soybean	nucleus	53.4	56.94
CDY40008	Canola	nucleus	51.33	56.7
CDY35134	Canola	nucleus	50.3	56.01
KRH36355	Soybean	mitochondrion, nucleus	14.79	55.25

Protein Annotations

Gene3D:1.10.1600.10	Gene3D:1.10.720.30	EntrezGene:100381505	MapMan:14.4.1.1	Gene3D:2.40.290.10	Gene3D:3.40.50.410
UniProt:A0A1D6F8Z7	GO:GO:0000723	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003690	GO:GO:0003824	GO:GO:0004003	GO:GO:0004386	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006303	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042162	GO:GO:0043564
InterPro:IPR003034	InterPro:IPR016194	InterPro:IPR036361	InterPro:IPR036465	InterPro:Ku70	InterPro:Ku70/Ku80_beta-barrel_dom
InterPro:Ku_C	InterPro:Ku_N	ProteinID:ONM27623.1	PFAM:PF02037	PFAM:PF02735	PFAM:PF03730
PFAM:PF03731	PIRSF:PIRSF003033	PFscan:PS50800	PANTHER:PTHR12604	PANTHER:PTHR12604:SF2	InterPro:SAP_dom
InterPro:SAP_dom_sf	SMART:SM00513	SMART:SM00559	InterPro:SPOC-like_C_dom_sf	SUPFAM:SSF100939	SUPFAM:SSF53300
SUPFAM:SSF68906	UniParc:UPI0008429B83	EnsemblPlantsGene:Zm00001d007807	EnsemblPlants:Zm00001d007807_P006	EnsemblPlants:Zm00001d007807_T006	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

ATP-dependent DNA helicase 2 subunit KU70

Coordinates

chr2:-:240011428..240022438

Molecular Weight (calculated)

75349.3 Da

IEP (calculated)

4.727

GRAVY (calculated)

-0.234

Length

676 amino acids

Sequence
(BLAST)

001: MDLDPEGIFR DDSDEDEDSV QEREANKEMV VYLVDASPKM FTPATTQDNE KQETHFHTIV NCITESLKTQ IIGRSYDEVA ICFFNTKEKK NLQDSAGVYV
101: YNVGDREQLD RPTAKLIKDF SLIEDSFMST IGSRYGITAG SRENTLYNAL WVAQALLRKG SVKTVSKRIL IFTNEDDPFG TITGAVKTDM IRTTLQRAKA
201: ILLFKTACCQ HISKCFCPFF TITILFFLQD AQDLGLSIEL LPLSPPDDQF NMSLFYADLI GLDGDEMTEY LPSAGDNGAV LSTTSQAGCQ LGTITWLDSL
301: SNLPLKVERS FICNDTGALL QDAQTRFQMY NDTIVKFSVR ELSEVKRVAS HHLRLIGFKP LDCLKDYHNL RPSTFIYPSD EVLCSSGIAS ASNCSFLLYC
401: SYPLNSEAEN RIFGSTCVFV ALHSSMLRLG RLGTIIVTSA FFTNHVYGFR FALAFYGNPT RPQLIALVAQ EEVTSSGRQF EPPGMHMIYL PYSDDIRYPE
501: EVHVTSDDAP RATDEQIKKA SNIFKRIDLI NFSACQFANP ALQRHYGILE ALALGEDEMP DIKDETLPDE EGLSKPGVAN AIEEFKTSVY GENYDQEEAE
601: AAAGKASRGN ASKKRKEVTD AAAQISAAYD WAELADNGKL KEMTTVELRS YLTAHDLPVS GKKDVLISRI LTHLGK

Best Arabidopsis Sequence Match ( AT1G16970.1 )
(BLAST)

001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K

Arabidopsis Description

KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.