Factsheet for Os07t0184900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0952500-01
Os11t0143300-02
Os12t0139400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16970.1	Os01t0952500-01	AT3G57040.1	18642946
AT1G16970.1	Os11t0143300-02	AT3G57040.1	18642946
AT1G16970.1	Os12t0139400-01	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G062500.2	Wheat	nucleus	88.14	87.86
TraesCS5A01G051500.1	Wheat	nucleus	88.14	87.86
TraesCS5B01G057400.1	Wheat	nucleus	87.98	87.7
HORVU5Hr1G012090.2	Barley	nucleus	87.18	86.62
EER97823	Sorghum	nucleus	85.26	84.71
EER95967	Sorghum	nucleus	84.62	84.08
Zm00001d007807_P006	Maize	nucleus	78.04	72.04
PGSC0003DMT400036518	Potato	mitochondrion	30.93	67.48
VIT_05s0062g01170.t01	Wine grape	nucleus	66.99	67.09
GSMUA_Achr4P17790_001	Banana	nucleus	20.83	67.01
Solyc09g098230.2.1	Tomato	nucleus	65.06	65.06
KRG93118	Soybean	nucleus	63.78	62.78
Bra026012.1-P	Field mustard	nucleus	57.05	61.7
AT1G16970.1	Thale cress	nucleus	61.22	61.51
CDY40008	Canola	nucleus	58.97	60.13
CDY35134	Canola	nucleus	57.69	59.31
KRH36355	Soybean	mitochondrion, nucleus	16.19	55.8

Protein Annotations

Gene3D:1.10.1600.10	Gene3D:1.10.720.30	MapMan:14.4.1.1	Gene3D:2.40.290.10	Gene3D:3.40.50.410	Gene3D:4.10.970.10
EntrezGene:4342584	EMBL:AK102066	ProteinID:BAC83189.1	ProteinID:BAC83190.1	ProteinID:BAF20975.1	ProteinID:BAT00354.1
ProteinID:BAT00355.1	ProteinID:EAZ38936.1	ProteinID:EEE66696.1	GO:GO:0000166	GO:GO:0000723	GO:GO:0000784
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003690	GO:GO:0003824
GO:GO:0004003	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006303	GO:GO:0006310	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0042162	GO:GO:0043564	InterPro:IPR003034	InterPro:IPR016194	InterPro:IPR027388	InterPro:IPR036361
InterPro:IPR036465	InterPro:Ku70	InterPro:Ku70/Ku80_beta-barrel_dom	InterPro:Ku70_bridge/pillars_dom_sf	InterPro:Ku_C	InterPro:Ku_N
EnsemblPlantsGene:Os07g0184900	EnsemblPlants:Os07t0184900-01	PFAM:PF02037	PFAM:PF02735	PFAM:PF03730	PFAM:PF03731
PIRSF:PIRSF003033	PFscan:PS50800	PANTHER:PTHR12604	PANTHER:PTHR12604:SF2	UniProt:Q7F1M0	InterPro:SAP_dom
InterPro:SAP_dom_sf	SMART:SM00513	SMART:SM00559	InterPro:SPOC-like_C_dom_sf	SUPFAM:SSF100939	SUPFAM:SSF53300
SUPFAM:SSF68906	TIGRFAMs:TIGR00578	UniParc:UPI00001BF23A	RefSeq:XP_015646738.1	SEG:seg	InterPro:vWFA_dom_sf

Description

rice homolog of Ku70, Ku70 homologATP-dependent DNA helicase 2 subunit KU70, Maintenance of chromosomal stability, Developmental growth, Telomere length regulation (Os07t0184900-01);Hypothetical conserved gene. (Os07t0184900-02);Similar to Ku70 homolog. (Os07t0184900-03);Hypothetical conserved gene. (Os07t0184900-04)

Coordinates

chr7:+:4485257..4496249

Molecular Weight (calculated)

70060.3 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.403

Length

624 amino acids

Sequence
(BLAST)

001: MDLDPEGLFR DDSDEDDDNV QEREANKEMV VYLIDASPKM FTPATKADEK EETHFHTIVN CITHALKTQI IGRSYDEVAI CFFNTKEKKN LQELAGVYVY
101: NVTEREPLDR PDARLIKEFS CIEDSFMSNI GSRYGITSGS RENTLYNALW VAQALLRKGS VKTVSKRIVI FTNEDDPFGG LTGAVKTDMI RTTIQRARDA
201: QDLGLSIELL PLSRPDEEFN MSLFYADLIG LEGDEIVDYL PSSGEKLEDM TNQLKKRMMK KRKVKTLAFA ITNDVCIEVN TYALIRSTTP GAITWLDSIS
301: NLPLKAERSF ICNDTGALIQ DPQKRFQVYN DKIVKFSTRE LSDVKRVSSH HLRLLGFKPL DYLKDYHNLR PSTFIYPSDE QIFGSTRVFV ALHSSMRRLG
401: RFALAFYGNP TRPQLVALIA QEEVTSAGGQ IEPPGIHMIY LPYSDDVRYP EEVHLTSDDA PRATDEQIKK ASNLLRRIDL KNFSVCQFSN PALQRHYGIL
501: EALALGEDEM PDVKDETLPD EEGLARPVVV KAVEEFKASV YGENYDQEEA EAAAAKAGAS KKRKALTDAA AEKSAAHNWA ELADTGKLKD MTVVDLKSYL
601: SAHGLPVSGK KEALVSRILT HLGK

Best Arabidopsis Sequence Match ( AT1G16970.1 )
(BLAST)

001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K

Arabidopsis Description

KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.