Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G108540.2 | |
| HORVU5Hr1G043090.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16970.1 | HORVU3Hr1G108540.2 | AT3G57040.1 | 18642946 |
| AT1G16970.1 | HORVU5Hr1G043090.1 | AT3G57040.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G057400.1 | Wheat | nucleus | 97.29 | 97.6 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 97.13 | 97.44 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 97.13 | 97.44 |
| Os07t0184900-01 | Rice | nucleus | 86.62 | 87.18 |
| EER95967 | Sorghum | nucleus | 82.64 | 82.64 |
| EER97823 | Sorghum | nucleus | 82.64 | 82.64 |
| Zm00001d007807_P006 | Maize | nucleus | 76.59 | 71.15 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 31.53 | 69.23 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 67.36 | 67.9 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 20.86 | 67.53 |
| Solyc09g098230.2.1 | Tomato | nucleus | 64.97 | 65.38 |
| KRG93118 | Soybean | nucleus | 62.9 | 62.3 |
| Bra026012.1-P | Field mustard | nucleus | 56.37 | 61.35 |
| AT1G16970.1 | Thale cress | nucleus | 59.87 | 60.55 |
| CDY40008 | Canola | nucleus | 58.44 | 59.97 |
| CDY35134 | Canola | nucleus | 57.01 | 58.98 |
| KRH36355 | Soybean | mitochondrion, nucleus | 16.24 | 56.35 |
Protein Annotations
Description
No Description!
Coordinates
chrchr5H:+:33655689..33665912
Molecular Weight (calculated)
70259.8 Da
IEP (calculated)
5.971
GRAVY (calculated)
-0.388
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDPEGIFR DDSDEDDDNL HEREANKEMV VYLIDASPKM FTPANAAKAD EKQETHFHTI VNCITQSLKT QIIGRSRDEV AICFFNTKEK KNLQELAGVY
101: VYNVTEREQL DRPDARLIKE FSCVEDSFMN NIGSRYGITS GSRENTLYNA LWVAQALLRK GSVKTVSKRI LIFTNEDDPF GGITGAAKAD MIRTTIQRAK
201: DAKDLGLSIE LLPLSRPDED FNMSLFYAEL IGLEGPPPPV LQYVPSAGEK YFSMTDQLRK RMMKKRKVKT LSFAITNDVC IEVNTYALIR PTAPGTITWL
301: DSISNLPLKT ERSFICNDTG ALLQAPQERF QLYNDKAVKF SVRELSDVKR VSSHHLRLLG FKPLDCLKDY HNLSPSTFIY PSDEQIFGST RVFVALHSSM
401: LRLGRFALAF YGTPTRPRLV ALVAQEEVIS SSGQDEPPGM HMIYLPYSDD VRYPEEVHLT SGDAPRATDE QIKKASNLLR RIDLKHFSVC RFANPGLQKH
501: YGILEALALG EDEMPDIKDE TLPDEEGMAR PGVVKAIEEF KAAVFGENYD QEEAEAAAAK GGASKKRKAI ADAASQKSAA YDWADLADNG KLKDMTVMDL
601: KTYLTAHGLP VSGKKDAIIS RILTHLGK
101: VYNVTEREQL DRPDARLIKE FSCVEDSFMN NIGSRYGITS GSRENTLYNA LWVAQALLRK GSVKTVSKRI LIFTNEDDPF GGITGAAKAD MIRTTIQRAK
201: DAKDLGLSIE LLPLSRPDED FNMSLFYAEL IGLEGPPPPV LQYVPSAGEK YFSMTDQLRK RMMKKRKVKT LSFAITNDVC IEVNTYALIR PTAPGTITWL
301: DSISNLPLKT ERSFICNDTG ALLQAPQERF QLYNDKAVKF SVRELSDVKR VSSHHLRLLG FKPLDCLKDY HNLSPSTFIY PSDEQIFGST RVFVALHSSM
401: LRLGRFALAF YGTPTRPRLV ALVAQEEVIS SSGQDEPPGM HMIYLPYSDD VRYPEEVHLT SGDAPRATDE QIKKASNLLR RIDLKHFSVC RFANPGLQKH
501: YGILEALALG EDEMPDIKDE TLPDEEGMAR PGVVKAIEEF KAAVFGENYD QEEAEAAAAK GGASKKRKAI ADAASQKSAA YDWADLADNG KLKDMTVMDL
601: KTYLTAHGLP VSGKKDAIIS RILTHLGK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.