Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G012090.2 | |
| HORVU5Hr1G118480.8 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57040.1 | HORVU5Hr1G012090.2 | AT1G16970.1 | 18642946 |
| AT3G57040.1 | HORVU5Hr1G118480.8 | AT5G08720.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G140200.1 | Wheat | nucleus | 88.52 | 93.51 |
| TraesCS5B01G132900.2 | Wheat | cytosol | 87.7 | 92.24 |
| TraesCS5A01G131600.2 | Wheat | nucleus | 88.11 | 90.34 |
| Os12t0139400-01 | Rice | nucleus | 63.52 | 77.11 |
| KXG27703 | Sorghum | nucleus | 63.52 | 76.73 |
| Os11t0143300-02 | Rice | cytosol | 63.93 | 75.0 |
| VIT_13s0067g03480.t01 | Wine grape | cytosol | 36.48 | 72.36 |
| VIT_13s0067g03490.t01 | Wine grape | nucleus | 43.03 | 71.92 |
| VIT_13s0067g03450.t01 | Wine grape | cytosol | 40.98 | 71.43 |
| CDY65526 | Canola | cytosol | 41.8 | 64.56 |
| PGSC0003DMT400007977 | Potato | nucleus | 42.62 | 63.8 |
| KRH13391 | Soybean | nucleus | 46.31 | 63.13 |
| KRH20737 | Soybean | nucleus | 45.9 | 62.57 |
| Solyc02g071220.2.1 | Tomato | nucleus | 41.39 | 60.84 |
| HORVU2Hr1G090270.1 | Barley | plastid | 32.79 | 59.26 |
| KRH30056 | Soybean | nucleus | 44.67 | 58.29 |
| VIT_13s0067g03460.t01 | Wine grape | nucleus | 38.52 | 57.67 |
| Zm00001d052476_P001 | Maize | nucleus | 28.69 | 57.38 |
| VIT_13s0067g03510.t01 | Wine grape | nucleus | 45.08 | 55.84 |
| KRH62857 | Soybean | nucleus | 42.21 | 55.68 |
| KXG22820 | Sorghum | endoplasmic reticulum | 63.52 | 55.56 |
| Zm00001d023242_P001 | Maize | nucleus | 31.15 | 54.68 |
| VIT_08s0007g05390.t01 | Wine grape | nucleus | 48.77 | 54.59 |
| PGSC0003DMT400076758 | Potato | nucleus | 48.77 | 52.65 |
| PGSC0003DMT400076726 | Potato | nucleus | 48.36 | 52.21 |
| CDX79942 | Canola | nucleus | 45.9 | 52.09 |
| Solyc10g079600.1.1 | Tomato | nucleus | 48.36 | 51.98 |
| Bra004615.1-P | Field mustard | nucleus | 45.49 | 51.87 |
| CDY23856 | Canola | nucleus | 45.49 | 51.63 |
| CDY35419 | Canola | nucleus | 45.08 | 50.93 |
| Bra000224.1-P | Field mustard | nucleus | 45.08 | 50.93 |
| CDY22518 | Canola | nucleus | 45.08 | 50.69 |
| PGSC0003DMT400007618 | Potato | nucleus | 44.26 | 50.47 |
| KRH66808 | Soybean | nucleus | 50.82 | 50.0 |
| KRG95133 | Soybean | nucleus | 50.0 | 49.59 |
| VIT_13s0067g03430.t01 | Wine grape | nucleus | 44.67 | 49.55 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 44.67 | 49.1 |
| CDY06934 | Canola | cytosol | 44.67 | 49.1 |
| Bra016943.1-P | Field mustard | cytosol | 44.67 | 49.1 |
| CDX76036 | Canola | nucleus | 45.08 | 48.89 |
| AT2G41310.1 | Thale cress | nucleus | 45.08 | 48.89 |
| Solyc10g079700.1.1 | Tomato | nucleus | 47.54 | 48.54 |
| AT3G57040.1 | Thale cress | nucleus | 46.31 | 48.29 |
| Bra014649.1-P | Field mustard | nucleus | 45.08 | 47.01 |
| CDY30966 | Canola | cytosol | 44.67 | 46.98 |
| CDY06142 | Canola | cytosol | 45.08 | 46.61 |
| Bra007295.1-P | Field mustard | cytosol | 45.08 | 46.61 |
| CDX72077 | Canola | cytosol | 44.67 | 46.38 |
| HORVU2Hr1G120490.2 | Barley | plastid | 32.79 | 46.24 |
| CDX67674 | Canola | cytosol | 44.26 | 46.15 |
| Bra003265.1-P | Field mustard | cytosol | 44.67 | 45.42 |
| HORVU3Hr1G108540.2 | Barley | nucleus | 45.49 | 44.76 |
| KRH53261 | Soybean | nucleus | 41.8 | 43.97 |
| KRH64643 | Soybean | nucleus | 41.8 | 43.4 |
| VIT_18s0001g02540.t01 | Wine grape | nucleus | 40.98 | 43.1 |
| KRH18706 | Soybean | nucleus | 35.66 | 40.85 |
| AT2G07440.1 | Thale cress | cytosol | 20.49 | 36.76 |
| HORVU6Hr1G059200.1 | Barley | cytosol, plastid | 22.54 | 28.65 |
| HORVU2Hr1G077000.3 | Barley | golgi, mitochondrion, plasma membrane, plastid | 20.9 | 17.65 |
Protein Annotations
| MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G043090 |
| EnsemblPlants:HORVU5Hr1G043090.1 | InterPro:IPR001789 | UniProt:M0VLZ6 | PFAM:PF00072 | PFscan:PS50110 | PANTHER:PTHR43874 |
| PANTHER:PTHR43874:SF5 | SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver | UniParc:UPI000296D17D | SEG:seg |
Description
No Description!
Coordinates
chrchr5H:+:329709551..329712299
Molecular Weight (calculated)
26662.0 Da
IEP (calculated)
5.548
GRAVY (calculated)
-0.517
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAAIAEAP FHVLAVDDSV LDRKLIERLL KTSSFQVTTV DSGTKALQFL GLHAEDASIS SVHADQLDVE VNVNLIITDY CMPGMTGYDL LKKIKESSSF
101: RDIPVVIMSS ENIPSRINRC LEEGANEFFL KPVRLSDMSK LKPHIMKSRC KEHSHEDQDL LSNSDTNPTN NSSSRDTITI SSSNPTDHST SDTINSSNPM
201: DHSSSDTISS SNPTDNSSGD SSNIRKRKAA DGEILPKTSR PNHS
101: RDIPVVIMSS ENIPSRINRC LEEGANEFFL KPVRLSDMSK LKPHIMKSRC KEHSHEDQDL LSNSDTNPTN NSSSRDTITI SSSNPTDHST SDTINSSNPM
201: DHSSSDTISS SNPTDNSSGD SSNIRKRKAA DGEILPKTSR PNHS
001: MVMETESKFH VLAVDDSLFD RKMIERLLQK SSCQVTTVDS GSKALEFLGL RVDDNDPNAL STSPQIHQEV EINLIITDYC MPGMTGYDLL KKVKESAAFR
101: SIPVVIMSSE NVPARISRCL EEGAEEFFLK PVKLADLTKL KPHMMKTKLK KESEKPVAIE EIVVSKPEIE EEEEESSVIE ILPLHQEIES EQLEPMLSSN
201: KRKAMEEVVS TDRSRPKYND ITTSV
101: SIPVVIMSSE NVPARISRCL EEGAEEFFLK PVKLADLTKL KPHMMKTKLK KESEKPVAIE EIVVSKPEIE EEEEESSVIE ILPLHQEIES EQLEPMLSSN
201: KRKAMEEVVS TDRSRPKYND ITTSV
Arabidopsis Description
ARR8Two-component response regulator ARR8 [Source:UniProtKB/Swiss-Prot;Acc:O80365]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.