Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G140200.1 | Wheat | nucleus | 96.55 | 96.97 |
| TraesCS5A01G131600.2 | Wheat | nucleus | 94.4 | 92.02 |
| HORVU5Hr1G043090.1 | Barley | nucleus | 92.24 | 87.7 |
| Os12t0139400-01 | Rice | nucleus | 66.81 | 77.11 |
| Os11t0143300-02 | Rice | cytosol | 67.24 | 75.0 |
| VIT_13s0067g03480.t01 | Wine grape | cytosol | 39.66 | 74.8 |
| KXG27703 | Sorghum | nucleus | 64.66 | 74.26 |
| VIT_13s0067g03450.t01 | Wine grape | cytosol | 44.4 | 73.57 |
| VIT_13s0067g03490.t01 | Wine grape | nucleus | 46.12 | 73.29 |
| CDY65526 | Canola | cytosol | 44.4 | 65.19 |
| PGSC0003DMT400007977 | Potato | nucleus | 45.26 | 64.42 |
| KRH13391 | Soybean | nucleus | 48.28 | 62.57 |
| KRH20737 | Soybean | nucleus | 47.84 | 62.01 |
| Solyc02g071220.2.1 | Tomato | nucleus | 43.97 | 61.45 |
| VIT_13s0067g03460.t01 | Wine grape | nucleus | 41.38 | 58.9 |
| TraesCS2B01G394900.1 | Wheat | cytosol | 34.05 | 58.52 |
| TraesCS4B01G178900.1 | Wheat | cytosol | 35.34 | 58.16 |
| KRH30056 | Soybean | nucleus | 46.55 | 57.75 |
| VIT_13s0067g03510.t01 | Wine grape | nucleus | 47.41 | 55.84 |
| KRH62857 | Soybean | nucleus | 43.97 | 55.14 |
| Zm00001d052476_P001 | Maize | nucleus | 28.88 | 54.92 |
| TraesCS6B01G259700.1 | Wheat | plastid | 33.62 | 54.55 |
| KXG22820 | Sorghum | endoplasmic reticulum | 64.66 | 53.76 |
| VIT_08s0007g05390.t01 | Wine grape | nucleus | 50.43 | 53.67 |
| PGSC0003DMT400076758 | Potato | nucleus | 52.16 | 53.54 |
| Solyc10g079600.1.1 | Tomato | nucleus | 52.16 | 53.3 |
| Zm00001d023242_P001 | Maize | nucleus | 31.9 | 53.24 |
| PGSC0003DMT400076726 | Potato | nucleus | 51.29 | 52.65 |
| CDX79942 | Canola | nucleus | 48.71 | 52.56 |
| Bra004615.1-P | Field mustard | nucleus | 48.28 | 52.34 |
| CDY23856 | Canola | nucleus | 48.28 | 52.09 |
| PGSC0003DMT400007618 | Potato | nucleus | 47.84 | 51.87 |
| Bra000224.1-P | Field mustard | nucleus | 48.28 | 51.85 |
| CDY35419 | Canola | nucleus | 48.28 | 51.85 |
| CDY22518 | Canola | nucleus | 48.28 | 51.61 |
| CDX76036 | Canola | nucleus | 50.0 | 51.56 |
| VIT_13s0067g03430.t01 | Wine grape | nucleus | 47.84 | 50.45 |
| Bra016943.1-P | Field mustard | cytosol | 48.28 | 50.45 |
| CDY06934 | Canola | cytosol | 48.28 | 50.45 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 48.28 | 50.45 |
| KRG95133 | Soybean | nucleus | 53.45 | 50.41 |
| KRH66808 | Soybean | nucleus | 53.88 | 50.4 |
| AT2G41310.1 | Thale cress | nucleus | 48.71 | 50.22 |
| AT3G57040.1 | Thale cress | nucleus | 50.0 | 49.57 |
| Bra014649.1-P | Field mustard | nucleus | 50.0 | 49.57 |
| CDY30966 | Canola | cytosol | 49.57 | 49.57 |
| Solyc10g079700.1.1 | Tomato | nucleus | 50.43 | 48.95 |
| CDY06142 | Canola | cytosol | 49.57 | 48.73 |
| Bra007295.1-P | Field mustard | cytosol | 49.57 | 48.73 |
| CDX72077 | Canola | cytosol | 49.14 | 48.51 |
| CDX67674 | Canola | cytosol | 48.28 | 47.86 |
| Bra003265.1-P | Field mustard | cytosol | 49.14 | 47.5 |
| TraesCS3B01G548600.1 | Wheat | cytosol | 47.84 | 46.25 |
| TraesCS2B01G582300.1 | Wheat | cytosol | 34.05 | 45.93 |
| KRH53261 | Soybean | nucleus | 44.4 | 44.4 |
| KRH64643 | Soybean | nucleus | 44.4 | 43.83 |
| VIT_18s0001g02540.t01 | Wine grape | nucleus | 43.53 | 43.53 |
| KRH18706 | Soybean | nucleus | 37.93 | 41.31 |
| AT2G07440.1 | Thale cress | cytosol | 21.98 | 37.5 |
| TraesCS2B01G326800.2 | Wheat | cytosol, endoplasmic reticulum, nucleus | 30.17 | 31.82 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G132900.2 | EnsemblPlantsGene:TraesCS5B01G132900 | Gene3D:3.40.50.2300 | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:CheY-like_superfamily | InterPro:IPR001789 | InterPro:Sig_transdc_resp-reg_receiver | PANTHER:PTHR43874 |
| PANTHER:PTHR43874:SF5 | PFAM:PF00072 | PFscan:PS50110 | SEG:seg | SMART:SM00448 | SUPFAM:SSF52172 |
| TIGR:cd00156 | MapMan:11.4.2.5 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:247665352..247666857
Molecular Weight (calculated)
25361.6 Da
IEP (calculated)
4.981
GRAVY (calculated)
-0.478
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAIAESPF HVLAVDDSVL DRKLIERLLK TSSFQVTTVD SGTKALEFLG LHGEDASISS VHADQLQDVE VNVNLIITDY CMPGMTGYDL LKKIKESSSF
101: KDIPVVIMSS ENIPSRINRC LEEGANEFFL KPVRLSDMSK LKPHIMKSRC KEHCHQDEDL LSNSETNPTN NSSSSSDTIT ISSSNPTDNS SGDTISSSNP
201: TDNSSGESSN IHKRKAADDE ILTKTSRPNH SC
101: KDIPVVIMSS ENIPSRINRC LEEGANEFFL KPVRLSDMSK LKPHIMKSRC KEHCHQDEDL LSNSETNPTN NSSSSSDTIT ISSSNPTDNS SGDTISSSNP
201: TDNSSGESSN IHKRKAADDE ILTKTSRPNH SC
001: MGMAAESQFH VLAVDDSLFD RKLIERLLQK SSCQVTTVDS GSKALEFLGL RQSTDSNDPN AFSKAPVNHQ VVEVNLIITD YCMPGMTGYD LLKKVKESSA
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV
Arabidopsis Description
ARR9Two-component response regulator ARR9 [Source:UniProtKB/Swiss-Prot;Acc:O80366]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.