Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G062500.2 | Wheat | nucleus | 99.2 | 99.2 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 99.04 | 99.04 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 97.44 | 97.13 |
| Os07t0184900-01 | Rice | nucleus | 87.86 | 88.14 |
| EER95967 | Sorghum | nucleus | 83.87 | 83.6 |
| EER97823 | Sorghum | nucleus | 83.87 | 83.6 |
| Zm00001d007807_P006 | Maize | nucleus | 77.32 | 71.6 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 31.15 | 68.18 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 67.73 | 68.06 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 20.93 | 67.53 |
| Solyc09g098230.2.1 | Tomato | nucleus | 65.5 | 65.71 |
| KRG93118 | Soybean | nucleus | 64.38 | 63.56 |
| Bra026012.1-P | Field mustard | nucleus | 57.03 | 61.87 |
| AT1G16970.1 | Thale cress | nucleus | 60.54 | 61.03 |
| CDY40008 | Canola | nucleus | 58.79 | 60.13 |
| CDY35134 | Canola | nucleus | 57.67 | 59.47 |
| KRH36355 | Soybean | mitochondrion, nucleus | 16.29 | 56.35 |
Protein Annotations
Description
No Description!
Coordinates
chr5A:+:46612343..46622429
Molecular Weight (calculated)
70145.5 Da
IEP (calculated)
5.371
GRAVY (calculated)
-0.398
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDPEGIFR DDSDEDDDNL HEREANKEMV VYLIDASPKM FTPANAAKPD ENQETHFHTI VNCITQSLKT QIIGRSRDEV AICFFNTKEK KNLQELAGVY
101: VYNVTEREQL DRPDARLIKE FSCVEDSFMN NIGSRYGITS GSRENTLYNA LWVAQALLRK GSVKTVSKRI LIFTNEDDPF GGITGAAKTD MIRTTIQRAK
201: DAQDLGLSIE LLPLSRPDED FNMSLFYADL IGLEGDEVVQ YVPSAGEKLE DMTDQLRKRM MKKRKVKTLS FAITNDVCIE VNTYALIRPT APGTITWLDS
301: ISNLPLKTER SFICNDTGAL LQAPQERFQL YNDKVVKFSV RELSDVKRVS SHHLRLLGFK PLDCLKDYHN LSPSTFIYPS DEQIFGSIRV FVALHSSMLR
401: LGRFALAFYG TPTRPRLVAL VAQEEVISSS GQDEPPGMHM IYLPYSDDVR YPEEVHLTSG DAPRATDEQI KKASNLLRRI DLKHFSVRHF ANPGLQKHYG
501: ILEALALGED EMPDIKDETL PDEEGLARPG VVKAIEEFKA AVFGENYDQE EAEAAAAKGG ASKKRKAIAD AASQKSAAYD WADLADNGKL KDMTVMDLKT
601: YLTAHGLPVS GKKDAIISRI LTHLGK
101: VYNVTEREQL DRPDARLIKE FSCVEDSFMN NIGSRYGITS GSRENTLYNA LWVAQALLRK GSVKTVSKRI LIFTNEDDPF GGITGAAKTD MIRTTIQRAK
201: DAQDLGLSIE LLPLSRPDED FNMSLFYADL IGLEGDEVVQ YVPSAGEKLE DMTDQLRKRM MKKRKVKTLS FAITNDVCIE VNTYALIRPT APGTITWLDS
301: ISNLPLKTER SFICNDTGAL LQAPQERFQL YNDKVVKFSV RELSDVKRVS SHHLRLLGFK PLDCLKDYHN LSPSTFIYPS DEQIFGSIRV FVALHSSMLR
401: LGRFALAFYG TPTRPRLVAL VAQEEVISSS GQDEPPGMHM IYLPYSDDVR YPEEVHLTSG DAPRATDEQI KKASNLLRRI DLKHFSVRHF ANPGLQKHYG
501: ILEALALGED EMPDIKDETL PDEEGLARPG VVKAIEEFKA AVFGENYDQE EAEAAAAKGG ASKKRKAIAD AASQKSAAYD WADLADNGKL KDMTVMDLKT
601: YLTAHGLPVS GKKDAIISRI LTHLGK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.