Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16970.1 | EES02064 | AT3G57040.1 | 18642946 |
| AT1G16970.1 | KXG22820 | AT3G57040.1 | 18642946 |
| AT1G16970.1 | KXG27703 | AT3G57040.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97823 | Sorghum | nucleus | 92.52 | 92.52 |
| Os07t0184900-01 | Rice | nucleus | 84.08 | 84.62 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 83.92 | 84.19 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 83.6 | 83.87 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 83.6 | 83.87 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 82.64 | 82.64 |
| Zm00001d007807_P006 | Maize | nucleus | 86.94 | 80.77 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 67.2 | 67.74 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 30.73 | 67.48 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 20.7 | 67.01 |
| Solyc09g098230.2.1 | Tomato | nucleus | 64.81 | 65.22 |
| Bra026012.1-P | Field mustard | nucleus | 58.12 | 63.26 |
| AT1G16970.1 | Thale cress | nucleus | 60.99 | 61.67 |
| KRG93118 | Soybean | nucleus | 61.94 | 61.36 |
| CDY40008 | Canola | nucleus | 59.71 | 61.27 |
| CDY35134 | Canola | nucleus | 58.6 | 60.63 |
| KRH36355 | Soybean | mitochondrion, nucleus | 16.4 | 56.91 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr2:+:5465159..5477940
Molecular Weight (calculated)
70636.8 Da
IEP (calculated)
5.034
GRAVY (calculated)
-0.423
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDPEGIFR DDSDEDEDNV QEREANKEMV VYLVDASPKM FTPATTQDNE KQETHFRTIV SCITESLKTQ IIGRSYDEVA ICFFNTKEKK NLQDSAGVYV
101: YNVGDREELD RPTAKLIKDF SSIEDSFMST IGSRYGITSG SRENTLYNAL WVAQALLRKG SVKTVSKRIL IFTNEDDPFG TITGAVKTDM IRTTVQRAKD
201: AQDLGLSIEL LPLSRPDEQF DMSLFYADLI GLDGDEITEY LPSAGVRLED MSNQLRKRIM KKRRVKTLSF AITNDVCIEV NTYALVRPTT PGTITWLDSL
301: SNLPLKAERS FICNDTGALL QDAQTRFQMY NDTTVKFSVR ELSEVKRVAS HHLRLLGFKP LDCLKDYHNL RPSTFVYPSD QRIFGSTRVF VALHSSMLRL
401: GRFALAFYGN PTRPQLVALV AQEEVTSSGG QFEPPGMHMI YLPYSDDIRY PEEVHVTFDD APRATDEQIK KASNLFKRID LKNFSTCQLA NPALQRHYGI
501: LEALALGEDE MPDIKDETLP HEEGLSRPGV VKAIEEFKTS VYGENYDQEE AEAAAGKASR GDASKKRKEI TDAAAQMSAV YDWAELADNG KLKEMTAAEL
601: KCYLTAHDLP VSGKKDVLVS RILTHLGK
101: YNVGDREELD RPTAKLIKDF SSIEDSFMST IGSRYGITSG SRENTLYNAL WVAQALLRKG SVKTVSKRIL IFTNEDDPFG TITGAVKTDM IRTTVQRAKD
201: AQDLGLSIEL LPLSRPDEQF DMSLFYADLI GLDGDEITEY LPSAGVRLED MSNQLRKRIM KKRRVKTLSF AITNDVCIEV NTYALVRPTT PGTITWLDSL
301: SNLPLKAERS FICNDTGALL QDAQTRFQMY NDTTVKFSVR ELSEVKRVAS HHLRLLGFKP LDCLKDYHNL RPSTFVYPSD QRIFGSTRVF VALHSSMLRL
401: GRFALAFYGN PTRPQLVALV AQEEVTSSGG QFEPPGMHMI YLPYSDDIRY PEEVHVTFDD APRATDEQIK KASNLFKRID LKNFSTCQLA NPALQRHYGI
501: LEALALGEDE MPDIKDETLP HEEGLSRPGV VKAIEEFKTS VYGENYDQEE AEAAAGKASR GDASKKRKEI TDAAAQMSAV YDWAELADNG KLKEMTAAEL
601: KCYLTAHDLP VSGKKDVLVS RILTHLGK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.