Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra003265.1-P | |
| Bra007295.1-P | |
| Bra014649.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16970.1 | Bra003265.1-P | AT3G57040.1 | 18642946 |
| AT1G16970.1 | Bra007295.1-P | AT3G57040.1 | 18642946 |
| AT1G16970.1 | Bra014649.1-P | AT3G57040.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35134 | Canola | nucleus | 95.32 | 90.61 |
| CDY40008 | Canola | nucleus | 95.49 | 90.03 |
| AT1G16970.1 | Thale cress | nucleus | 89.43 | 83.09 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 32.76 | 66.08 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 70.88 | 65.65 |
| Solyc09g098230.2.1 | Tomato | nucleus | 66.38 | 61.38 |
| KRG93118 | Soybean | nucleus | 65.86 | 59.94 |
| EER95967 | Sorghum | nucleus | 63.26 | 58.12 |
| EER97823 | Sorghum | nucleus | 62.74 | 57.64 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 62.22 | 57.35 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 19.24 | 57.22 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 62.05 | 57.19 |
| Os07t0184900-01 | Rice | nucleus | 61.7 | 57.05 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 61.87 | 57.03 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 61.35 | 56.37 |
| GSMUA_Achr4P17800_001 | Banana | nucleus | 41.77 | 54.04 |
| KRH36355 | Soybean | mitochondrion, nucleus | 15.77 | 50.28 |
| Zm00001d007807_P006 | Maize | nucleus | 58.41 | 49.85 |
Protein Annotations
Description
AT1G16970 (E=1e-299) KU70, ATKU70 | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding
Coordinates
chrA06:-:6519705..6523548
Molecular Weight (calculated)
64803.6 Da
IEP (calculated)
5.372
GRAVY (calculated)
-0.397
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDPEDEDE KQESHFHIAV SCIAQSLKSH IINRSNDEIA ICFFNTREKK NLQDLNGVYV FNVPQRECID RPTARLIKDF DLIEESFIKD IGSQNGIVSD
101: SRENSLYSAL WVAQALLRKG SSKTADKRIF LFTNEDDPFG SMRISVKEDM TRTTLQRAKD AQDLGISIEL LPLSHPDKQF DISLFYKDLI GLNGDELTEF
201: MPSVGQKLED MKDQLKKRVL AKRIAKRITF MICDGVSIEL NGYALLRPAT PGTITWLDST TNLPIKVERS YVCADTGAIM QEPIQRIQPY MNRDVMFTAA
301: ELSELKKIST GHLRLLGFKP LSCLKDYHNM KPSTFLYPSD KEVIGSTRAF IALHRSMIQL GRFAVAFYGG TTPPRLVALV AQDEIESDGG QVEPPGMNMI
401: YLPYANDIRD IEELHSKPGV AAPRASEDQL KKASALMRRL ELKDFSVCQF ANPALQRHYA MLQAIALDED QLGETRDETL PDEGGMNRPG VVKAVEEFKE
501: SIYGDDSEEE SDSGAKEKSR KRKAADAGDY DFVELAKTGK LKDLTVVELK TYLTANNLPL SGKKDALINR ILAHVSK
101: SRENSLYSAL WVAQALLRKG SSKTADKRIF LFTNEDDPFG SMRISVKEDM TRTTLQRAKD AQDLGISIEL LPLSHPDKQF DISLFYKDLI GLNGDELTEF
201: MPSVGQKLED MKDQLKKRVL AKRIAKRITF MICDGVSIEL NGYALLRPAT PGTITWLDST TNLPIKVERS YVCADTGAIM QEPIQRIQPY MNRDVMFTAA
301: ELSELKKIST GHLRLLGFKP LSCLKDYHNM KPSTFLYPSD KEVIGSTRAF IALHRSMIQL GRFAVAFYGG TTPPRLVALV AQDEIESDGG QVEPPGMNMI
401: YLPYANDIRD IEELHSKPGV AAPRASEDQL KKASALMRRL ELKDFSVCQF ANPALQRHYA MLQAIALDED QLGETRDETL PDEGGMNRPG VVKAVEEFKE
501: SIYGDDSEEE SDSGAKEKSR KRKAADAGDY DFVELAKTGK LKDLTVVELK TYLTANNLPL SGKKDALINR ILAHVSK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.