Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16970.1 | EES02064 | AT3G57040.1 | 18642946 |
| AT1G16970.1 | KXG22820 | AT3G57040.1 | 18642946 |
| AT1G16970.1 | KXG27703 | AT3G57040.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95967 | Sorghum | nucleus | 92.52 | 92.52 |
| Os07t0184900-01 | Rice | nucleus | 84.71 | 85.26 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 83.92 | 84.19 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 83.6 | 83.87 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 83.6 | 83.87 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 82.64 | 82.64 |
| Zm00001d007807_P006 | Maize | nucleus | 85.67 | 79.59 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 67.04 | 67.58 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 30.57 | 67.13 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 20.54 | 66.49 |
| Solyc09g098230.2.1 | Tomato | nucleus | 63.22 | 63.62 |
| Bra026012.1-P | Field mustard | nucleus | 57.64 | 62.74 |
| KRG93118 | Soybean | nucleus | 61.94 | 61.36 |
| AT1G16970.1 | Thale cress | nucleus | 60.67 | 61.35 |
| CDY40008 | Canola | nucleus | 59.08 | 60.62 |
| CDY35134 | Canola | nucleus | 57.96 | 59.97 |
| KRH36355 | Soybean | mitochondrion, nucleus | 16.56 | 57.46 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr2:-:433375..443417
Molecular Weight (calculated)
70529.9 Da
IEP (calculated)
4.882
GRAVY (calculated)
-0.377
Length
628 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDPEGIFR DDSDEDEDNV QEREANKDMV VYLVDASPKM FTPATTQDNE KQETYFHTIV NCITESLKTQ IIGRSYDEVA ICFFNTKEKK NLQDSAGVYV
101: YNVGDREQLD RPTAKLIKDF SCIEDSFMST IGSRFGITAG SRENTLYNAL WVAQALLRKG SVKTVSKRIL IFTNEDDPFG TVTGAVKTDM IRTTIQRAKD
201: AQDLGLSIEL LPLSQPDEQF DMSLFYADLI GLDGDEITEY LPSAGDKLED MANQLRKRIM RKRRVKTLSF AITNDVCIEV NTYALVRPTT PGKITWLDSL
301: SNLPLKAERS FICNDTGALL QDPQTRFQMY NDTIVKFSVL ELSEVKRVAS HHLRLLGFKP LDCLKDYHNL RPSAFIYPSD ERIFGSTRVF VALHSSMLRL
401: GRFALAFYGN PTRPQLVALV AQEEVTSSGG QLEPPGMHMI YLPYSDDIRY PEEFHVTSDD APRATNEQIK KALNLLKRID LKKFSACQFA NPALQRHYGI
501: LEALALGEDE MPDIKDDTLP DEEGLSRPGV VNAIEEFKTS VYGENYDQEE AEAAAGKASR GDASKKRKQI TDAAVQMSAA YDWAELADNG KLKEMTVVEL
601: KSYLTAHGLP VSGKKEVLVS RILTHLGM
101: YNVGDREQLD RPTAKLIKDF SCIEDSFMST IGSRFGITAG SRENTLYNAL WVAQALLRKG SVKTVSKRIL IFTNEDDPFG TVTGAVKTDM IRTTIQRAKD
201: AQDLGLSIEL LPLSQPDEQF DMSLFYADLI GLDGDEITEY LPSAGDKLED MANQLRKRIM RKRRVKTLSF AITNDVCIEV NTYALVRPTT PGKITWLDSL
301: SNLPLKAERS FICNDTGALL QDPQTRFQMY NDTIVKFSVL ELSEVKRVAS HHLRLLGFKP LDCLKDYHNL RPSAFIYPSD ERIFGSTRVF VALHSSMLRL
401: GRFALAFYGN PTRPQLVALV AQEEVTSSGG QLEPPGMHMI YLPYSDDIRY PEEFHVTSDD APRATNEQIK KALNLLKRID LKKFSACQFA NPALQRHYGI
501: LEALALGEDE MPDIKDDTLP DEEGLSRPGV VNAIEEFKTS VYGENYDQEE AEAAAGKASR GDASKKRKQI TDAAVQMSAA YDWAELADNG KLKEMTVVEL
601: KSYLTAHGLP VSGKKEVLVS RILTHLGM
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.