Factsheet for PGSC0003DMT400036518

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007618
PGSC0003DMT400076726
PGSC0003DMT400076758

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16970.1	PGSC0003DMT400007618	AT3G57040.1	18642946
AT1G16970.1	PGSC0003DMT400076726	AT3G57040.1	18642946
AT1G16970.1	PGSC0003DMT400076758	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17790_001	Banana	nucleus	47.55	70.1
KRH36355	Soybean	mitochondrion, nucleus	37.41	59.12
Solyc09g098230.2.1	Tomato	nucleus	94.76	43.43
VIT_05s0062g01170.t01	Wine grape	nucleus	80.07	36.76
Bra026012.1-P	Field mustard	nucleus	66.08	32.76
KRG93118	Soybean	nucleus	71.33	32.18
HORVU5Hr1G012090.2	Barley	nucleus	69.23	31.53
TraesCS5B01G057400.1	Wheat	nucleus	68.53	31.31
TraesCS5D01G062500.2	Wheat	nucleus	68.53	31.31
TraesCS5A01G051500.1	Wheat	nucleus	68.18	31.15
Os07t0184900-01	Rice	nucleus	67.48	30.93
EER95967	Sorghum	nucleus	67.48	30.73
AT1G16970.1	Thale cress	nucleus	66.43	30.6
EER97823	Sorghum	nucleus	67.13	30.57
CDY40008	Canola	nucleus	62.24	29.09
CDY35134	Canola	nucleus	60.84	28.67
Zm00001d007807_P006	Maize	nucleus	66.08	27.96
GSMUA_Achr4P17800_001	Banana	nucleus	22.38	14.35

Protein Annotations

Gene3D:1.10.1600.10	Gene3D:1.10.720.30	MapMan:14.4.1.1	Gene3D:2.40.290.10	GO:GO:0000723	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003690	GO:GO:0003824	GO:GO:0004003
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006303	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0042162	GO:GO:0043564	InterPro:IPR003034	InterPro:IPR016194	InterPro:IPR036361	InterPro:Ku70
InterPro:Ku70/Ku80_beta-barrel_dom	InterPro:Ku_C	UniProt:M1B3S3	PFAM:PF02037	PFAM:PF02735	PFAM:PF03730
EnsemblPlantsGene:PGSC0003DMG400014069	PGSC:PGSC0003DMG400014069	EnsemblPlants:PGSC0003DMT400036518	PFscan:PS50800	PANTHER:PTHR12604	PANTHER:PTHR12604:SF2
InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513	SMART:SM00559	InterPro:SPOC-like_C_dom_sf	SUPFAM:SSF100939
SUPFAM:SSF68906	UniParc:UPI00029568D3	:	:	:	:

Description

Ku70 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400014069]

Coordinates

chr9:-:61034839..61040101

Molecular Weight (calculated)

32154.5 Da

IEP (calculated)

5.779

GRAVY (calculated)

-0.331

Length

286 amino acids

Sequence
(BLAST)

001: MFSVDELSEV KRVSTGHLRL LGFKPLSCLK DYHNLKPATF VFPSDEEVVG STCLFVALHR SMLRLKRFAV AFYGNSSHPQ LVALVAQDEI MTPSGQVEPP
101: GMHLIYLPYS DDIRHVEELH TDSNSVPHAT DDQIKKASAL VRRIDLKDFS VCQFANPALQ RHYAVLQALA LDEDEMPEIK DETLPDEEGM ARPGIVKALE
201: EFKLSVFGEN YEEEDSNIEG KAEPTRKRKA NAIKEYGNYV WADLADNGKL KDLTVVELKY YLGAHNLPVT GKKEALISRI LTHMGK

Best Arabidopsis Sequence Match ( AT1G16970.1 )
(BLAST)

001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K

Arabidopsis Description

KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.